Magnesium in PDB 7n77: Cryo-Em Structure of ATP13A2 D458N/D962N Mutant in the Alf-Bound E1P- Like State

The structure of Cryo-Em Structure of ATP13A2 D458N/D962N Mutant in the Alf-Bound E1P- Like State also contains other interesting chemical elements:

Fluorine	(F)	4 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 D458N/D962N Mutant in the Alf-Bound E1P- Like State (pdb code 7n77). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of ATP13A2 D458N/D962N Mutant in the Alf-Bound E1P- Like State, PDB code: 7n77:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of ATP13A2 D458N/D962N Mutant in the Alf-Bound E1P- Like State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 D458N/D962N Mutant in the Alf-Bound E1P- Like State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:4.5 occ:1.00 OD2 A:ASP508 1.7 10.6 1.0 F2 A:ALF1201 1.9 10.4 1.0 O A:THR510 2.4 9.8 1.0 OD1 A:ASP873 2.5 10.3 1.0 CG A:ASP508 2.9 10.6 1.0 AL A:ALF1201 3.5 10.4 1.0 OD1 A:ASP508 3.6 10.6 1.0 C A:THR510 3.6 9.8 1.0 N A:GLY874 3.7 16.1 1.0 CG A:ASP873 3.7 10.3 1.0 F3 A:ALF1201 3.9 10.4 1.0 OD2 A:ASP877 3.9 15.5 1.0 CB A:ASP508 4.0 10.6 1.0 F4 A:ALF1201 4.0 10.4 1.0 CA A:GLY874 4.0 16.1 1.0 OD2 A:ASP873 4.3 10.3 1.0 CA A:THR510 4.4 9.8 1.0 N A:THR510 4.5 9.8 1.0 N A:GLY511 4.5 9.3 1.0 CB A:THR510 4.6 9.8 1.0 N A:ASP873 4.6 10.3 1.0 CA A:GLY511 4.6 9.3 1.0 C A:ASP873 4.7 10.3 1.0 OG1 A:THR512 4.8 9.2 1.0 CG A:ASP877 4.9 15.5 1.0 N A:THR512 4.9 9.2 1.0 CB A:ASP873 4.9 10.3 1.0 CA A:ASP873 5.0 10.3 1.0

S.I.Sim, S.Von Bulow, G.Hummer, E.Park. Structural Basis of Polyamine Transport By Human ATP13A2 (PARK9). Mol.Cell 2021.
ISSN: ISSN 1097-2765
PubMed: 34715013
DOI: 10.1016/J.MOLCEL.2021.08.017