Magnesium in PDB 7n78: Cryo-Em Structure of ATP13A2 in the E2-Pi State

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 in the E2-Pi State (pdb code 7n78). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of ATP13A2 in the E2-Pi State, PDB code: 7n78:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of ATP13A2 in the E2-Pi State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 in the E2-Pi State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:38.6 occ:1.00 OD2 A:ASP508 1.9 36.2 1.0 O2 A:PO41201 2.0 44.9 1.0 O A:THR510 2.2 41.3 1.0 OD1 A:ASP873 2.7 42.9 1.0 CG A:ASP508 3.1 36.2 1.0 P A:PO41201 3.4 44.9 1.0 C A:THR510 3.5 41.3 1.0 OD1 A:ASP508 3.6 36.2 1.0 CG A:ASP873 3.8 42.9 1.0 OD2 A:ASP877 4.0 43.2 1.0 O1 A:PO41201 4.1 44.9 1.0 O3 A:PO41201 4.2 44.9 1.0 CB A:ASP508 4.2 36.2 1.0 CA A:THR510 4.3 41.3 1.0 N A:THR510 4.3 41.3 1.0 O4 A:PO41201 4.3 44.9 1.0 OD2 A:ASP873 4.3 42.9 1.0 CB A:THR510 4.4 41.3 1.0 N A:GLY511 4.4 41.1 1.0 O A:GLY342 4.5 48.3 1.0 OG1 A:THR512 4.5 36.8 1.0 N A:GLY874 4.6 47.3 1.0 CA A:GLY511 4.6 41.1 1.0 N A:ASP873 4.6 42.9 1.0 C A:ASP873 4.8 42.9 1.0 CA A:GLY874 4.8 47.3 1.0 N A:THR512 4.8 36.8 1.0 CA A:GLY342 4.9 48.3 1.0 C A:LYS509 4.9 36.9 1.0 N A:LYS509 4.9 36.9 1.0 C A:GLY511 5.0 41.1 1.0

S.I.Sim, S.Von Bulow, G.Hummer, E.Park. Structural Basis of Polyamine Transport By Human ATP13A2 (PARK9). Mol.Cell 2021.
ISSN: ISSN 1097-2765
PubMed: 34715013
DOI: 10.1016/J.MOLCEL.2021.08.017