Magnesium in PDB 7nar: Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)

The structure of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 97;

Binding sites:

The binding sites of Magnesium atom in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) (pdb code 7nar). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 97 binding sites of Magnesium where determined in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement), PDB code: 7nar:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:66.6 occ:1.00 OP2 A:G450 3.5 90.6 1.0 O2' A:A451 3.8 92.0 1.0 N7 A:G481 4.1 90.9 1.0 OP2 A:G449 4.1 93.7 1.0 O6 A:G481 4.3 90.9 1.0 N7 A:G450 4.4 90.6 1.0 C2' A:A451 4.7 92.0 1.0 C8 A:G450 4.8 90.6 1.0 C5 A:G481 4.9 90.9 1.0 N3 A:A451 4.9 92.0 1.0 P A:G450 4.9 90.6 1.0 N7 A:G449 5.0 93.7 1.0 O5' A:G449 5.0 93.7 1.0

Magnesium binding site 2 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:66.7 occ:1.00 O6 A:G357 3.7 87.2 1.0 OP2 A:C355 3.9 81.3 1.0 N7 A:G357 4.0 87.2 1.0 C6 A:G357 4.5 87.2 1.0 O2' A:C352 4.5 86.5 1.0 N7 A:A356 4.6 84.5 1.0 C5 A:G357 4.7 87.2 1.0 OP2 A:A356 4.8 84.5 1.0 C5 A:C355 4.8 81.3 1.0 C2' A:C352 4.9 86.5 1.0 O2 A:C352 4.9 86.5 1.0

Magnesium binding site 3 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:75.9 occ:1.00 N7 A:G617 3.7 87.8 1.0 OP1 A:A621 4.1 84.8 1.0 OP2 A:A621 4.3 84.8 1.0 C8 A:G617 4.4 87.8 1.0 C5 A:G617 4.6 87.8 1.0 P A:A621 4.6 84.8 1.0 O6 A:G617 4.6 87.8 1.0 OP1 A:C620 4.7 86.6 1.0 OP2 A:G617 4.7 87.8 1.0 C6 A:G617 5.0 87.8 1.0

Magnesium binding site 4 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:76.3 occ:1.00 OP1 A:U387 2.3 81.2 1.0 OP1 A:A59 2.5 81.0 1.0 O3' A:C386 2.8 84.3 1.0 P A:U387 3.1 81.2 1.0 P A:A59 3.9 81.0 1.0 C3' A:C386 4.1 84.3 1.0 OP2 A:U387 4.1 81.2 1.0 O3' A:C58 4.2 84.5 1.0 O5' A:U387 4.3 81.2 1.0 C5' A:U387 4.4 81.2 1.0 C4' A:C386 4.5 84.3 1.0 O2' A:C386 4.7 84.3 1.0 OP2 A:A59 4.8 81.0 1.0 C5' A:C386 4.8 84.3 1.0 O5' A:G61 4.9 84.8 1.0 O5' A:A59 4.9 81.0 1.0 C5' A:A59 4.9 81.0 1.0

Magnesium binding site 5 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:81.1 occ:1.00 O4 A:U426 4.2 105.8 1.0 OP2 A:A415 4.2 110.3 1.0 O6 A:G417 4.3 107.0 1.0 N7 A:G416 4.5 109.3 1.0 O6 A:G416 4.7 109.3 1.0 N4 A:C418 4.7 107.5 1.0 OP2 A:G416 4.7 109.3 1.0 O5' A:A415 4.8 110.3 1.0 P A:A415 4.8 110.3 1.0 O6 A:G425 4.9 111.5 1.0 OP1 A:A415 4.9 110.3 1.0

Magnesium binding site 6 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:73.7 occ:1.00 OP1 A:A547 2.0 85.0 1.0 P A:A547 3.4 85.0 1.0 OP1 A:G548 3.6 82.7 1.0 OP2 A:A547 4.0 85.0 1.0 O5' A:G548 4.2 82.7 1.0 O3' A:A546 4.3 87.3 1.0 N7 A:G402 4.3 83.8 1.0 O5' A:A547 4.4 85.0 1.0 N4 A:C403 4.4 85.7 1.0 C5' A:A547 4.5 85.0 1.0 P A:G548 4.6 82.7 1.0 O6 A:G402 4.7 83.8 1.0 C4' A:A547 4.9 85.0 1.0

Magnesium binding site 7 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:74.2 occ:1.00 N7 A:G324 2.2 83.2 1.0 C8 A:G324 2.8 83.2 1.0 C5 A:G324 3.4 83.2 1.0 OP2 A:G324 3.9 83.2 1.0 OP2 A:U323 4.0 86.8 1.0 O6 A:G324 4.1 83.2 1.0 C6 A:G324 4.1 83.2 1.0 N9 A:G324 4.1 83.2 1.0 C4 A:G324 4.4 83.2 1.0 OP2 A:G326 4.7 82.8 1.0 O5' A:G324 4.7 83.2 1.0 O5' A:U323 4.8 86.8 1.0 C5 A:U323 4.8 86.8 1.0 C6 A:U323 4.9 86.8 1.0 P A:G324 5.0 83.2 1.0

Magnesium binding site 8 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:75.9 occ:1.00 OP2 A:A814 2.0 84.0 1.0 P A:A814 3.2 84.0 1.0 OP1 A:A814 3.5 84.0 1.0 OP1 A:G577 3.8 82.2 1.0 OP2 A:G577 4.0 82.2 1.0 C5' A:A814 4.2 84.0 1.0 O5' A:A814 4.2 84.0 1.0 N7 A:A816 4.3 84.1 1.0 O3' A:U813 4.3 84.3 1.0 P A:G577 4.4 82.2 1.0 OP2 A:A815 4.5 85.6 1.0 OP1 A:A815 4.6 85.6 1.0 N6 A:A816 4.7 84.1 1.0 C3' A:U813 5.0 84.3 1.0

Magnesium binding site 9 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:74.2 occ:1.00 OP1 A:G21 2.0 83.7 1.0 P A:G21 3.4 83.7 1.0 N1 A:A573 3.8 79.0 1.0 N6 A:A573 4.0 79.0 1.0 O3' A:U20 4.1 85.0 1.0 OP2 A:G21 4.2 83.7 1.0 N2 A:G567 4.2 82.4 1.0 O2' A:G567 4.3 82.4 1.0 N3 A:G567 4.3 82.4 1.0 C6 A:A573 4.4 79.0 1.0 O5' A:G21 4.5 83.7 1.0 N6 A:A563 4.6 84.7 1.0 C2 A:A573 4.7 79.0 1.0 O2' A:G568 4.8 81.3 1.0 C2 A:G567 4.8 82.4 1.0 C5' A:G21 4.8 83.7 1.0

Magnesium binding site 10 out of 97 in the Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Complete Bacterial 30S Ribosomal Subunit Assembly Complex State F (+Rsga)(Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:82.0 occ:1.00 O6 A:G646 3.9 99.1 1.0 O4 A:U593 4.1 101.4 1.0 N4 A:C647 4.4 101.9 1.0 O6 A:G645 4.4 94.0 1.0 O6 A:G592 4.5 103.0 1.0 N7 A:G645 4.6 94.0 1.0 N7 A:G646 4.7 99.1 1.0 C6 A:G646 4.9 99.1 1.0

A.Schedlbauer, I.Iturrioz, B.Ochoa-Lizarralde, T.Diercks, J.P.Lopez-Alonso, J.L.Lavin, T.Kaminishi, R.Capuni, N.Dhimole, E.De Astigarraga, D.Gil-Carton, P.Fucini, S.R.Connell. A Conserved Rrna Switch Is Central to Decoding Site Maturation on the Small Ribosomal Subunit. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34088665
DOI: 10.1126/SCIADV.ABF7547