Magnesium in PDB 7nb8: Plasmodium Falciparum Kinesin-5 Motor Domain Without Nucleotide, Complexed with 14 Protofilament Microtubule.

The binding sites of Magnesium atom in the Plasmodium Falciparum Kinesin-5 Motor Domain Without Nucleotide, Complexed with 14 Protofilament Microtubule. (pdb code 7nb8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Plasmodium Falciparum Kinesin-5 Motor Domain Without Nucleotide, Complexed with 14 Protofilament Microtubule., PDB code: 7nb8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Plasmodium Falciparum Kinesin-5 Motor Domain Without Nucleotide, Complexed with 14 Protofilament Microtubule.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Plasmodium Falciparum Kinesin-5 Motor Domain Without Nucleotide, Complexed with 14 Protofilament Microtubule. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:14.7 occ:1.00 OD2 A:ASP98 1.8 69.6 1.0 OD1 A:ASP69 1.9 69.6 1.0 OD2 A:ASP69 2.0 69.6 1.0 O1G A:GTP500 2.1 20.0 1.0 OD1 A:ASP98 2.1 69.6 1.0 CG A:ASP69 2.3 69.6 1.0 CG A:ASP98 2.3 69.6 1.0 HB3 A:GLU71 3.3 83.5 1.0 H A:GLU71 3.3 83.5 1.0 PG A:GTP500 3.4 20.0 1.0 HB2 A:GLU71 3.4 83.5 1.0 HG1 A:THR145 3.7 83.5 1.0 HG21 A:VAL74 3.7 83.5 1.0 O2G A:GTP500 3.7 20.0 1.0 CB A:GLU71 3.8 69.6 1.0 O1B A:GTP500 3.9 20.0 1.0 CB A:ASP98 3.9 69.6 1.0 H A:ALA99 3.9 83.5 1.0 H A:LEU70 4.0 83.5 1.0 CB A:ASP69 4.1 69.6 1.0 H A:GLN11 4.1 83.5 1.0 OG1 A:THR145 4.1 69.6 1.0 N A:GLU71 4.1 69.6 1.0 HB2 A:ASP98 4.2 83.5 1.0 OE1 A:GLU71 4.3 69.6 1.0 HA2 A:GLY10 4.3 83.5 1.0 HG23 A:VAL74 4.3 83.5 1.0 HA A:ASP98 4.3 83.5 1.0 HB2 A:LEU70 4.3 83.5 1.0 O3G A:GTP500 4.3 20.0 1.0 HB2 A:GLN11 4.4 83.5 1.0 HB A:THR145 4.5 83.5 1.0 HB3 A:ASP69 4.5 83.5 1.0 CG2 A:VAL74 4.5 69.6 1.0 HB3 A:ASP98 4.5 83.5 1.0 N A:LEU70 4.5 69.6 1.0 HB2 A:ASP69 4.6 83.5 1.0 O3B A:GTP500 4.6 20.0 1.0 CA A:GLU71 4.6 69.6 1.0 CA A:ASP98 4.7 69.6 1.0 HA A:ASP69 4.8 83.5 1.0 PB A:GTP500 4.8 20.0 1.0 N A:GLN11 4.8 69.6 1.0 CB A:THR145 4.9 69.6 1.0 N A:ALA99 4.9 69.6 1.0 CA A:ASP69 4.9 69.6 1.0 CG A:GLU71 5.0 69.6 1.0 H A:THR145 5.0 83.5 1.0 CD A:GLU71 5.0 69.6 1.0

Magnesium binding site 2 out of 2 in the Plasmodium Falciparum Kinesin-5 Motor Domain Without Nucleotide, Complexed with 14 Protofilament Microtubule.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Plasmodium Falciparum Kinesin-5 Motor Domain Without Nucleotide, Complexed with 14 Protofilament Microtubule. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:31.4 occ:1.00 OE1 B:GLU69 1.8 69.6 1.0 OD2 B:ASP67 1.9 69.6 1.0 OE1 B:GLN11 1.9 69.6 1.0 O2B B:G2P500 2.3 20.0 1.0 O2G B:G2P500 2.5 20.0 1.0 CD B:GLN11 2.8 69.6 1.0 CD B:GLU69 3.0 69.6 1.0 HG3 B:GLN11 3.0 83.5 1.0 CG B:ASP67 3.1 69.6 1.0 CG B:GLN11 3.4 69.6 1.0 H B:GLN11 3.5 83.5 1.0 PG B:G2P500 3.5 20.0 1.0 OD1 B:ASP67 3.6 69.6 1.0 O1G B:G2P500 3.7 20.0 1.0 PB B:G2P500 3.7 20.0 1.0 HG3 B:GLU69 3.7 83.5 1.0 HB2 B:GLN11 3.7 83.5 1.0 OE2 B:GLU69 3.7 69.6 1.0 NE2 B:GLN11 3.9 69.6 1.0 O3B B:G2P500 3.9 20.0 1.0 CG B:GLU69 3.9 69.6 1.0 HB2 B:GLU69 4.0 83.5 1.0 HE21 B:GLN11 4.0 83.5 1.0 CB B:GLN11 4.1 69.6 1.0 N B:GLN11 4.3 69.6 1.0 HG2 B:GLN11 4.3 83.5 1.0 O2A B:G2P500 4.4 20.0 1.0 HA2 B:GLY10 4.5 83.5 1.0 CB B:GLU69 4.5 69.6 1.0 C3A B:G2P500 4.6 20.0 1.0 HE22 B:GLN11 4.7 83.5 1.0 HG1 B:THR143 4.8 83.5 1.0 CB B:ASP67 4.8 69.6 1.0 HG2 B:GLU69 4.8 83.5 1.0 O1B B:G2P500 4.9 20.0 1.0 CA B:GLN11 4.9 69.6 1.0 O3G B:G2P500 4.9 20.0 1.0 HB B:THR143 4.9 83.5 1.0 HB2 B:ASP67 5.0 83.5 1.0 HB3 B:GLU69 5.0 83.5 1.0

A.D.Cook, A.J.Roberts, J.Atherton, R.Tewari, M.Topf, C.A.Moores. Cryo-Em Structure of A Microtubule-Bound Parasite Kinesin Motor and Implications For Its Mechanism and Inhibition. J.Biol.Chem. 01063 2021.
ISSN: ESSN 1083-351X
PubMed: 34375637
DOI: 10.1016/J.JBC.2021.101063