Magnesium in PDB 7nfy: P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs

Enzymatic activity of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs

Magnesium Binding Sites:

Magnesium binding site 1 out of 5 in 7nfy

Magnesium Binding Sites List in 7nfy

Magnesium binding site 1 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:97.1 occ:1.00 OG1 A:THR530 2.1 111.2 1.0 O1B A:AGS1001 2.1 105.3 1.0 O2G A:AGS1001 2.1 105.3 1.0 HB A:THR530 2.7 111.2 1.0 CB A:THR530 2.9 111.2 1.0 HH12 B:ARG652 2.9 102.0 1.0 PG A:AGS1001 2.9 105.3 1.0 S1G A:AGS1001 2.9 105.3 1.0 PB A:AGS1001 3.3 105.3 1.0 HG21 A:THR530 3.4 111.2 1.0 O1A A:AGS1001 3.5 105.3 1.0 O3B A:AGS1001 3.5 105.3 1.0 H A:THR530 3.6 111.2 1.0 NH1 B:ARG652 3.7 102.0 1.0 CG2 A:THR530 3.7 111.2 1.0 HH12 A:ARG710 3.8 102.4 1.0 HH11 B:ARG652 4.0 102.0 1.0 CA A:THR530 4.1 111.2 1.0 N A:THR530 4.2 111.2 1.0 PA A:AGS1001 4.2 105.3 1.0 HZ2 A:LYS529 4.2 109.1 1.0 HH22 B:ARG652 4.3 102.0 1.0 O3G A:AGS1001 4.3 105.3 1.0 HG22 A:THR530 4.3 111.2 1.0 O3A A:AGS1001 4.3 105.3 1.0 O2B A:AGS1001 4.3 105.3 1.0 O2A A:AGS1001 4.4 105.3 1.0 HG23 A:THR530 4.4 111.2 1.0 HA A:THR530 4.5 111.2 1.0 NH1 A:ARG710 4.6 102.4 1.0 OD1 A:ASP590 4.6 113.6 1.0 HZ3 A:LYS529 4.6 109.1 1.0 HH11 A:ARG710 4.6 102.4 1.0 CZ B:ARG652 4.7 102.0 1.0 HG1 A:THR638 4.8 111.0 1.0 OD2 A:ASP590 4.8 113.6 1.0 HB2 A:LYS529 4.8 109.1 1.0 NH2 B:ARG652 4.9 102.0 1.0 NZ A:LYS529 4.9 109.1 1.0 H A:GLY526 5.0 114.2 1.0

Magnesium binding site 2 out of 5 in 7nfy

Magnesium Binding Sites List in 7nfy

Magnesium binding site 2 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:70.3 occ:1.00 OG1 B:THR530 2.1 88.4 1.0 O1B B:AGS1001 2.1 103.3 1.0 O2G B:AGS1001 2.1 103.3 1.0 S1G B:AGS1001 2.9 103.3 1.0 PG B:AGS1001 2.9 103.3 1.0 HB B:THR530 2.9 88.4 1.0 CB B:THR530 3.0 88.4 1.0 PB B:AGS1001 3.2 103.3 1.0 O1A B:AGS1001 3.3 103.3 1.0 HH22 C:ARG652 3.4 86.2 1.0 H B:THR530 3.5 88.4 1.0 O3B B:AGS1001 3.5 103.3 1.0 HG21 B:THR530 3.6 88.4 1.0 OE2 B:GLU591 3.8 92.2 1.0 CG2 B:THR530 3.9 88.4 1.0 PA B:AGS1001 4.0 103.3 1.0 O3A B:AGS1001 4.0 103.3 1.0 N B:THR530 4.1 88.4 1.0 HZ3 B:LYS529 4.2 91.6 1.0 CA B:THR530 4.2 88.4 1.0 NH2 C:ARG652 4.2 86.2 1.0 O2A B:AGS1001 4.2 103.3 1.0 O3G B:AGS1001 4.2 103.3 1.0 HH12 C:ARG652 4.2 86.2 1.0 HH22 B:ARG710 4.3 89.5 1.0 HZ1 B:LYS529 4.4 91.6 1.0 O2B B:AGS1001 4.5 103.3 1.0 HB2 B:LYS529 4.5 91.6 1.0 HG23 B:THR530 4.5 88.4 1.0 HG1 B:THR638 4.6 90.0 1.0 HG22 B:THR530 4.6 88.4 1.0 HH21 C:ARG652 4.6 86.2 1.0 HA B:THR530 4.6 88.4 1.0 NZ B:LYS529 4.7 91.6 1.0 NH2 B:ARG710 4.8 89.5 1.0 HH21 B:ARG710 4.8 89.5 1.0 HE2 B:LYS529 4.8 91.6 1.0 CD B:GLU591 4.9 92.2 1.0 NH1 C:ARG652 4.9 86.2 1.0 OD1 B:ASP590 4.9 90.5 1.0 OD2 B:ASP590 5.0 90.5 1.0

Magnesium binding site 3 out of 5 in 7nfy

Magnesium Binding Sites List in 7nfy

Magnesium binding site 3 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:105.5 occ:1.00 OG1 C:THR530 2.1 89.0 1.0 O2G C:AGS1001 2.1 119.9 1.0 O1B C:AGS1001 2.1 119.9 1.0 S1G C:AGS1001 2.7 119.9 1.0 PG C:AGS1001 2.8 119.9 1.0 HB C:THR530 2.8 89.0 1.0 CB C:THR530 3.0 89.0 1.0 O1A C:AGS1001 3.1 119.9 1.0 PB C:AGS1001 3.3 119.9 1.0 H C:THR530 3.4 89.0 1.0 O3B C:AGS1001 3.4 119.9 1.0 HG21 C:THR530 3.6 89.0 1.0 PA C:AGS1001 3.9 119.9 1.0 CG2 C:THR530 3.9 89.0 1.0 O2A C:AGS1001 3.9 119.9 1.0 HH21 D:ARG652 4.1 98.1 1.0 N C:THR530 4.1 89.0 1.0 O3A C:AGS1001 4.1 119.9 1.0 O3G C:AGS1001 4.1 119.9 1.0 HZ2 C:LYS529 4.1 94.5 1.0 CA C:THR530 4.1 89.0 1.0 HH21 C:ARG710 4.3 97.4 1.0 HZ3 C:LYS529 4.3 94.5 1.0 HH22 D:ARG652 4.4 98.1 1.0 HG23 C:THR530 4.4 89.0 1.0 OD2 D:ASP612 4.5 93.8 1.0 O2B C:AGS1001 4.5 119.9 1.0 HB2 C:LYS529 4.6 94.5 1.0 HG22 C:THR530 4.6 89.0 1.0 NH2 D:ARG652 4.6 98.1 1.0 NZ C:LYS529 4.6 94.5 1.0 HA C:THR530 4.7 89.0 1.0 OD1 C:ASP590 4.7 87.6 1.0 OE2 C:GLU591 4.7 92.4 1.0 HG1 C:THR638 4.8 87.8 1.0 HE2 C:LYS529 4.8 94.5 1.0 HH22 C:ARG710 4.8 97.4 1.0 NH2 C:ARG710 4.9 97.4 1.0 OD2 C:ASP590 4.9 87.6 1.0

Magnesium binding site 4 out of 5 in 7nfy

Magnesium Binding Sites List in 7nfy

Magnesium binding site 4 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:100.1 occ:1.00 OG1 D:THR530 2.1 84.9 1.0 O2G D:AGS1001 2.1 95.6 1.0 O1B D:AGS1001 2.1 95.6 1.0 PG D:AGS1001 3.0 95.6 1.0 HB D:THR530 3.1 84.9 1.0 CB D:THR530 3.1 84.9 1.0 S1G D:AGS1001 3.2 95.6 1.0 PB D:AGS1001 3.3 95.6 1.0 O1A D:AGS1001 3.3 95.6 1.0 H D:THR530 3.4 84.9 1.0 O3B D:AGS1001 3.5 95.6 1.0 HG21 D:THR530 3.8 84.9 1.0 CG2 D:THR530 4.0 84.9 1.0 N D:THR530 4.1 84.9 1.0 PA D:AGS1001 4.2 95.6 1.0 HZ1 D:LYS529 4.2 85.2 1.0 CA D:THR530 4.2 84.9 1.0 O3A D:AGS1001 4.3 95.6 1.0 O2A D:AGS1001 4.4 95.6 1.0 HH21 E:ARG652 4.4 100.4 1.0 O2B D:AGS1001 4.4 95.6 1.0 O3G D:AGS1001 4.4 95.6 1.0 HB2 D:LYS529 4.4 85.2 1.0 HG23 D:THR530 4.5 84.9 1.0 HH22 E:ARG652 4.5 100.4 1.0 HG1 D:THR638 4.5 101.7 1.0 HE2 D:LYS529 4.6 85.2 1.0 NH2 E:ARG652 4.7 100.4 1.0 HZ2 D:LYS529 4.7 85.2 1.0 OD1 D:ASP590 4.7 106.4 1.0 HA D:THR530 4.7 84.9 1.0 NZ D:LYS529 4.8 85.2 1.0 HG22 D:THR530 4.8 84.9 1.0 HH21 D:ARG710 5.0 90.6 1.0

Magnesium binding site 5 out of 5 in 7nfy

Magnesium Binding Sites List in 7nfy

Magnesium binding site 5 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1002 b:106.2 occ:1.00 OG1 F:THR530 2.1 107.0 1.0 O1B F:AGS1001 2.1 103.4 1.0 O2G F:AGS1001 2.1 103.4 1.0 PG F:AGS1001 3.0 103.4 1.0 CB F:THR530 3.2 107.0 1.0 HB F:THR530 3.3 107.0 1.0 PB F:AGS1001 3.3 103.4 1.0 O1A F:AGS1001 3.3 103.4 1.0 S1G F:AGS1001 3.3 103.4 1.0 H F:THR530 3.4 107.0 1.0 O3B F:AGS1001 3.5 103.4 1.0 HG21 F:THR530 3.9 107.0 1.0 O2A F:AGS1001 3.9 103.4 1.0 PA F:AGS1001 3.9 103.4 1.0 O3A F:AGS1001 4.1 103.4 1.0 CG2 F:THR530 4.1 107.0 1.0 N F:THR530 4.2 107.0 1.0 HB2 F:LYS529 4.2 110.3 1.0 OD1 F:ASP590 4.3 127.7 1.0 CA F:THR530 4.3 107.0 1.0 OD2 F:ASP590 4.4 127.7 1.0 O3G F:AGS1001 4.4 103.4 1.0 O2B F:AGS1001 4.5 103.4 1.0 HG23 F:THR530 4.5 107.0 1.0 HA F:THR530 4.8 107.0 1.0 CG F:ASP590 4.8 127.7 1.0 HD2 F:LYS529 4.9 110.3 1.0 HH12 F:ARG546 4.9 120.1 1.0 HG22 F:THR530 4.9 107.0 1.0

Reference: