Magnesium in PDB 7nfy: P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs

Enzymatic activity of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs

All present enzymatic activity of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs:
3.4.21.53;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs (pdb code 7nfy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs, PDB code: 7nfy:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7nfy

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Magnesium binding site 1 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:97.1
occ:1.00
OG1 A:THR530 2.1 111.2 1.0
O1B A:AGS1001 2.1 105.3 1.0
O2G A:AGS1001 2.1 105.3 1.0
HB A:THR530 2.7 111.2 1.0
CB A:THR530 2.9 111.2 1.0
HH12 B:ARG652 2.9 102.0 1.0
PG A:AGS1001 2.9 105.3 1.0
S1G A:AGS1001 2.9 105.3 1.0
PB A:AGS1001 3.3 105.3 1.0
HG21 A:THR530 3.4 111.2 1.0
O1A A:AGS1001 3.5 105.3 1.0
O3B A:AGS1001 3.5 105.3 1.0
H A:THR530 3.6 111.2 1.0
NH1 B:ARG652 3.7 102.0 1.0
CG2 A:THR530 3.7 111.2 1.0
HH12 A:ARG710 3.8 102.4 1.0
HH11 B:ARG652 4.0 102.0 1.0
CA A:THR530 4.1 111.2 1.0
N A:THR530 4.2 111.2 1.0
PA A:AGS1001 4.2 105.3 1.0
HZ2 A:LYS529 4.2 109.1 1.0
HH22 B:ARG652 4.3 102.0 1.0
O3G A:AGS1001 4.3 105.3 1.0
HG22 A:THR530 4.3 111.2 1.0
O3A A:AGS1001 4.3 105.3 1.0
O2B A:AGS1001 4.3 105.3 1.0
O2A A:AGS1001 4.4 105.3 1.0
HG23 A:THR530 4.4 111.2 1.0
HA A:THR530 4.5 111.2 1.0
NH1 A:ARG710 4.6 102.4 1.0
OD1 A:ASP590 4.6 113.6 1.0
HZ3 A:LYS529 4.6 109.1 1.0
HH11 A:ARG710 4.6 102.4 1.0
CZ B:ARG652 4.7 102.0 1.0
HG1 A:THR638 4.8 111.0 1.0
OD2 A:ASP590 4.8 113.6 1.0
HB2 A:LYS529 4.8 109.1 1.0
NH2 B:ARG652 4.9 102.0 1.0
NZ A:LYS529 4.9 109.1 1.0
H A:GLY526 5.0 114.2 1.0

Magnesium binding site 2 out of 5 in 7nfy

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Magnesium binding site 2 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:70.3
occ:1.00
OG1 B:THR530 2.1 88.4 1.0
O1B B:AGS1001 2.1 103.3 1.0
O2G B:AGS1001 2.1 103.3 1.0
S1G B:AGS1001 2.9 103.3 1.0
PG B:AGS1001 2.9 103.3 1.0
HB B:THR530 2.9 88.4 1.0
CB B:THR530 3.0 88.4 1.0
PB B:AGS1001 3.2 103.3 1.0
O1A B:AGS1001 3.3 103.3 1.0
HH22 C:ARG652 3.4 86.2 1.0
H B:THR530 3.5 88.4 1.0
O3B B:AGS1001 3.5 103.3 1.0
HG21 B:THR530 3.6 88.4 1.0
OE2 B:GLU591 3.8 92.2 1.0
CG2 B:THR530 3.9 88.4 1.0
PA B:AGS1001 4.0 103.3 1.0
O3A B:AGS1001 4.0 103.3 1.0
N B:THR530 4.1 88.4 1.0
HZ3 B:LYS529 4.2 91.6 1.0
CA B:THR530 4.2 88.4 1.0
NH2 C:ARG652 4.2 86.2 1.0
O2A B:AGS1001 4.2 103.3 1.0
O3G B:AGS1001 4.2 103.3 1.0
HH12 C:ARG652 4.2 86.2 1.0
HH22 B:ARG710 4.3 89.5 1.0
HZ1 B:LYS529 4.4 91.6 1.0
O2B B:AGS1001 4.5 103.3 1.0
HB2 B:LYS529 4.5 91.6 1.0
HG23 B:THR530 4.5 88.4 1.0
HG1 B:THR638 4.6 90.0 1.0
HG22 B:THR530 4.6 88.4 1.0
HH21 C:ARG652 4.6 86.2 1.0
HA B:THR530 4.6 88.4 1.0
NZ B:LYS529 4.7 91.6 1.0
NH2 B:ARG710 4.8 89.5 1.0
HH21 B:ARG710 4.8 89.5 1.0
HE2 B:LYS529 4.8 91.6 1.0
CD B:GLU591 4.9 92.2 1.0
NH1 C:ARG652 4.9 86.2 1.0
OD1 B:ASP590 4.9 90.5 1.0
OD2 B:ASP590 5.0 90.5 1.0

Magnesium binding site 3 out of 5 in 7nfy

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Magnesium binding site 3 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1002

b:105.5
occ:1.00
OG1 C:THR530 2.1 89.0 1.0
O2G C:AGS1001 2.1 119.9 1.0
O1B C:AGS1001 2.1 119.9 1.0
S1G C:AGS1001 2.7 119.9 1.0
PG C:AGS1001 2.8 119.9 1.0
HB C:THR530 2.8 89.0 1.0
CB C:THR530 3.0 89.0 1.0
O1A C:AGS1001 3.1 119.9 1.0
PB C:AGS1001 3.3 119.9 1.0
H C:THR530 3.4 89.0 1.0
O3B C:AGS1001 3.4 119.9 1.0
HG21 C:THR530 3.6 89.0 1.0
PA C:AGS1001 3.9 119.9 1.0
CG2 C:THR530 3.9 89.0 1.0
O2A C:AGS1001 3.9 119.9 1.0
HH21 D:ARG652 4.1 98.1 1.0
N C:THR530 4.1 89.0 1.0
O3A C:AGS1001 4.1 119.9 1.0
O3G C:AGS1001 4.1 119.9 1.0
HZ2 C:LYS529 4.1 94.5 1.0
CA C:THR530 4.1 89.0 1.0
HH21 C:ARG710 4.3 97.4 1.0
HZ3 C:LYS529 4.3 94.5 1.0
HH22 D:ARG652 4.4 98.1 1.0
HG23 C:THR530 4.4 89.0 1.0
OD2 D:ASP612 4.5 93.8 1.0
O2B C:AGS1001 4.5 119.9 1.0
HB2 C:LYS529 4.6 94.5 1.0
HG22 C:THR530 4.6 89.0 1.0
NH2 D:ARG652 4.6 98.1 1.0
NZ C:LYS529 4.6 94.5 1.0
HA C:THR530 4.7 89.0 1.0
OD1 C:ASP590 4.7 87.6 1.0
OE2 C:GLU591 4.7 92.4 1.0
HG1 C:THR638 4.8 87.8 1.0
HE2 C:LYS529 4.8 94.5 1.0
HH22 C:ARG710 4.8 97.4 1.0
NH2 C:ARG710 4.9 97.4 1.0
OD2 C:ASP590 4.9 87.6 1.0

Magnesium binding site 4 out of 5 in 7nfy

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Magnesium binding site 4 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1002

b:100.1
occ:1.00
OG1 D:THR530 2.1 84.9 1.0
O2G D:AGS1001 2.1 95.6 1.0
O1B D:AGS1001 2.1 95.6 1.0
PG D:AGS1001 3.0 95.6 1.0
HB D:THR530 3.1 84.9 1.0
CB D:THR530 3.1 84.9 1.0
S1G D:AGS1001 3.2 95.6 1.0
PB D:AGS1001 3.3 95.6 1.0
O1A D:AGS1001 3.3 95.6 1.0
H D:THR530 3.4 84.9 1.0
O3B D:AGS1001 3.5 95.6 1.0
HG21 D:THR530 3.8 84.9 1.0
CG2 D:THR530 4.0 84.9 1.0
N D:THR530 4.1 84.9 1.0
PA D:AGS1001 4.2 95.6 1.0
HZ1 D:LYS529 4.2 85.2 1.0
CA D:THR530 4.2 84.9 1.0
O3A D:AGS1001 4.3 95.6 1.0
O2A D:AGS1001 4.4 95.6 1.0
HH21 E:ARG652 4.4 100.4 1.0
O2B D:AGS1001 4.4 95.6 1.0
O3G D:AGS1001 4.4 95.6 1.0
HB2 D:LYS529 4.4 85.2 1.0
HG23 D:THR530 4.5 84.9 1.0
HH22 E:ARG652 4.5 100.4 1.0
HG1 D:THR638 4.5 101.7 1.0
HE2 D:LYS529 4.6 85.2 1.0
NH2 E:ARG652 4.7 100.4 1.0
HZ2 D:LYS529 4.7 85.2 1.0
OD1 D:ASP590 4.7 106.4 1.0
HA D:THR530 4.7 84.9 1.0
NZ D:LYS529 4.8 85.2 1.0
HG22 D:THR530 4.8 84.9 1.0
HH21 D:ARG710 5.0 90.6 1.0

Magnesium binding site 5 out of 5 in 7nfy

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Magnesium binding site 5 out of 5 in the P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1002

b:106.2
occ:1.00
OG1 F:THR530 2.1 107.0 1.0
O1B F:AGS1001 2.1 103.4 1.0
O2G F:AGS1001 2.1 103.4 1.0
PG F:AGS1001 3.0 103.4 1.0
CB F:THR530 3.2 107.0 1.0
HB F:THR530 3.3 107.0 1.0
PB F:AGS1001 3.3 103.4 1.0
O1A F:AGS1001 3.3 103.4 1.0
S1G F:AGS1001 3.3 103.4 1.0
H F:THR530 3.4 107.0 1.0
O3B F:AGS1001 3.5 103.4 1.0
HG21 F:THR530 3.9 107.0 1.0
O2A F:AGS1001 3.9 103.4 1.0
PA F:AGS1001 3.9 103.4 1.0
O3A F:AGS1001 4.1 103.4 1.0
CG2 F:THR530 4.1 107.0 1.0
N F:THR530 4.2 107.0 1.0
HB2 F:LYS529 4.2 110.3 1.0
OD1 F:ASP590 4.3 127.7 1.0
CA F:THR530 4.3 107.0 1.0
OD2 F:ASP590 4.4 127.7 1.0
O3G F:AGS1001 4.4 103.4 1.0
O2B F:AGS1001 4.5 103.4 1.0
HG23 F:THR530 4.5 107.0 1.0
HA F:THR530 4.8 107.0 1.0
CG F:ASP590 4.8 127.7 1.0
HD2 F:LYS529 4.9 110.3 1.0
HH12 F:ARG546 4.9 120.1 1.0
HG22 F:THR530 4.9 107.0 1.0

Reference:

I.Mohammed, K.A.Schmitz, N.Schenck, T.Maier, J.P.Abrahams. P1A-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Substrate Protein and Atpgs To Be Published.
Page generated: Wed Mar 3 15:04:46 2021

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