Magnesium in PDB 7ng4: P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix

Enzymatic activity of P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix

All present enzymatic activity of P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix:
3.4.21.53;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix (pdb code 7ng4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix, PDB code: 7ng4:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7ng4

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Magnesium binding site 1 out of 4 in the P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:287.2
occ:1.00
 OG1 A:THR530 2.1 264.7 1.0
O2G A:ATP1001 2.1 270.7 1.0
O1B A:ATP1001 2.1 270.7 1.0
HB A:THR530 2.4 264.7 1.0
CB A:THR530 2.7 264.7 1.0
O1A A:ATP1001 2.8 270.7 1.0
O1G A:ATP1001 2.8 270.7 1.0
PG A:ATP1001 2.9 270.7 1.0
PB A:ATP1001 3.3 270.7 1.0
HG21 A:THR530 3.4 264.7 1.0
O3B A:ATP1001 3.4 270.7 1.0
H A:THR530 3.6 264.7 1.0
CG2 A:THR530 3.6 264.7 1.0
HH12 B:ARG652 3.8 274.9 1.0
PA A:ATP1001 3.9 270.7 1.0
CA A:THR530 3.9 264.7 1.0
N A:THR530 4.0 264.7 1.0
HG22 A:THR530 4.1 264.7 1.0
HH22 B:ARG652 4.2 274.9 1.0
HH12 A:ARG710 4.2 258.8 1.0
O3A A:ATP1001 4.2 270.7 1.0
HH11 A:ARG710 4.2 258.8 1.0
O3G A:ATP1001 4.3 270.7 1.0
HB2 A:LYS529 4.3 272.8 1.0
HG23 A:THR530 4.3 264.7 1.0
HA A:THR530 4.4 264.7 1.0
HZ2 A:LYS529 4.4 272.8 1.0
O2A A:ATP1001 4.5 270.7 1.0
O2B A:ATP1001 4.5 270.7 1.0
NH1 A:ARG710 4.6 258.8 1.0
NH1 B:ARG652 4.7 274.9 1.0
HZ3 A:LYS529 4.8 272.8 1.0
H A:GLY526 4.8 269.0 1.0
NH2 B:ARG652 5.0 274.9 1.0
C A:LYS529 5.0 272.8 1.0
NZ A:LYS529 5.0 272.8 1.0

Magnesium binding site 2 out of 4 in 7ng4

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Magnesium binding site 2 out of 4 in the P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:219.4
occ:1.00
 OG1 B:THR530 2.1 216.4 1.0
O2G B:ATP1001 2.1 232.2 1.0
O1B B:ATP1001 2.1 232.2 1.0
O1G B:ATP1001 2.7 232.2 1.0
PG B:ATP1001 2.8 232.2 1.0
HB B:THR530 2.9 216.4 1.0
CB B:THR530 3.0 216.4 1.0
O1A B:ATP1001 3.3 232.2 1.0
PB B:ATP1001 3.3 232.2 1.0
O3B B:ATP1001 3.4 232.2 1.0
HG21 B:THR530 3.6 216.4 1.0
H B:THR530 3.9 216.4 1.0
CG2 B:THR530 3.9 216.4 1.0
HZ3 B:LYS529 3.9 230.0 1.0
PA B:ATP1001 4.1 232.2 1.0
HZ1 B:LYS529 4.1 230.0 1.0
O3G B:ATP1001 4.2 232.2 1.0
CA B:THR530 4.2 216.4 1.0
N B:THR530 4.2 216.4 1.0
HB2 B:LYS529 4.2 230.0 1.0
O3A B:ATP1001 4.2 232.2 1.0
O2A B:ATP1001 4.2 232.2 1.0
O2B B:ATP1001 4.4 232.2 1.0
HH22 C:ARG652 4.4 231.1 1.0
NZ B:LYS529 4.5 230.0 1.0
HG23 B:THR530 4.5 216.4 1.0
HG22 B:THR530 4.5 216.4 1.0
HE2 B:LYS529 4.5 230.0 1.0
HA B:THR530 4.6 216.4 1.0
OD2 B:ASP590 4.6 247.8 1.0
OD1 B:ASP590 4.8 247.8 1.0
HG1 B:THR638 4.8 240.6 1.0
HH22 B:ARG710 4.8 226.9 1.0
HH21 C:ARG652 4.9 231.1 1.0
NH2 C:ARG652 4.9 231.1 1.0

Magnesium binding site 3 out of 4 in 7ng4

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Magnesium binding site 3 out of 4 in the P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1002

b:248.8
occ:1.00
 OG1 C:THR530 2.1 199.4 1.0
O2G C:ATP1001 2.1 216.3 1.0
O1B C:ATP1001 2.1 216.3 1.0
O1G C:ATP1001 2.1 216.3 1.0
HB C:THR530 2.4 199.4 1.0
PG C:ATP1001 2.5 216.3 1.0
CB C:THR530 2.7 199.4 1.0
O1A C:ATP1001 2.8 216.3 1.0
PB C:ATP1001 3.3 216.3 1.0
O3B C:ATP1001 3.3 216.3 1.0
H C:THR530 3.4 199.4 1.0
HG21 C:THR530 3.5 199.4 1.0
PA C:ATP1001 3.7 216.3 1.0
CG2 C:THR530 3.7 199.4 1.0
O3G C:ATP1001 3.8 216.3 1.0
O2A C:ATP1001 3.8 216.3 1.0
N C:THR530 3.8 199.4 1.0
CA C:THR530 3.9 199.4 1.0
HZ3 C:LYS529 3.9 214.2 1.0
O3A C:ATP1001 4.1 216.3 1.0
HG22 C:THR530 4.3 199.4 1.0
HG23 C:THR530 4.3 199.4 1.0
HB2 C:LYS529 4.4 214.2 1.0
O2B C:ATP1001 4.4 216.3 1.0
HA C:THR530 4.5 199.4 1.0
HH22 D:ARG652 4.5 253.4 1.0
HZ2 C:LYS529 4.6 214.2 1.0
NZ C:LYS529 4.7 214.2 1.0
OD2 D:ASP612 4.7 250.7 1.0
HE22 D:GLN615 4.7 241.4 1.0
C C:LYS529 4.9 214.2 1.0
C C:THR530 4.9 199.4 1.0
H C:LYS529 4.9 214.2 1.0
H C:SER531 5.0 204.7 1.0

Magnesium binding site 4 out of 4 in 7ng4

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Magnesium binding site 4 out of 4 in the P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1002

b:282.5
occ:1.00
 O1A F:ATP1001 1.9 286.2 1.0
OG1 F:THR530 2.1 266.6 1.0
O2G F:ATP1001 2.1 286.2 1.0
O1B F:ATP1001 2.1 286.2 1.0
PG F:ATP1001 2.9 286.2 1.0
O1G F:ATP1001 3.0 286.2 1.0
PA F:ATP1001 3.1 286.2 1.0
CB F:THR530 3.2 266.6 1.0
PB F:ATP1001 3.3 286.2 1.0
HB F:THR530 3.3 266.6 1.0
H F:THR530 3.3 266.6 1.0
O3B F:ATP1001 3.4 286.2 1.0
O2A F:ATP1001 3.6 286.2 1.0
HG21 F:THR530 3.8 266.6 1.0
O3A F:ATP1001 3.8 286.2 1.0
H5'2 F:ATP1001 4.1 286.2 1.0
N F:THR530 4.1 266.6 1.0
CG2 F:THR530 4.1 266.6 1.0
CA F:THR530 4.3 266.6 1.0
O3G F:ATP1001 4.3 286.2 1.0
O5' F:ATP1001 4.3 286.2 1.0
HB2 F:LYS529 4.4 275.8 1.0
HG23 F:THR530 4.5 266.6 1.0
OD2 F:ASP590 4.5 308.9 1.0
C5' F:ATP1001 4.5 286.2 1.0
H5'1 F:ATP1001 4.6 286.2 1.0
O2B F:ATP1001 4.7 286.2 1.0
HA F:THR530 4.7 266.6 1.0
HG22 F:THR530 4.9 266.6 1.0
HH12 F:ARG546 4.9 280.1 1.0
NH1 F:ARG546 5.0 280.1 1.0
HE2 F:LYS529 5.0 275.8 1.0

Reference:

I.Mohammed, K.A.Schmitz, N.Schenck, T.Maier, J.P.Abrahams. P1B-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein in Presence of Atp/Adp Mix To Be Published.
Page generated: Thu Oct 3 01:38:30 2024

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