Atomistry » Magnesium » PDB 7nem-7noz » 7nii
Atomistry »
  Magnesium »
    PDB 7nem-7noz »
      7nii »

Magnesium in PDB 7nii: Wzc-K540M Mgadp C1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Wzc-K540M Mgadp C1 (pdb code 7nii). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Wzc-K540M Mgadp C1, PDB code: 7nii:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 1 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:11.2
occ:1.00
OG1 A:THR541 1.9 6.9 1.0
O1B A:ADP1000 2.3 6.8 1.0
CB A:THR541 3.2 6.9 1.0
OD2 A:ASP642 3.4 7.8 1.0
OD2 A:ASP564 3.7 13.6 1.0
PB A:ADP1000 3.7 6.8 1.0
OD1 A:ASP642 4.0 7.8 1.0
N A:THR541 4.0 6.9 1.0
O3B A:ADP1000 4.0 6.8 1.0
CG A:ASP642 4.0 7.8 1.0
CA A:THR541 4.1 6.9 1.0
OH H:TYR717 4.2 17.3 1.0
CG2 A:THR541 4.2 6.9 1.0
O1A A:ADP1000 4.4 6.8 1.0
CE A:MET540 4.5 9.3 1.0
O A:THR643 4.5 10.7 1.0
O2B A:ADP1000 4.6 6.8 1.0
CG A:ASP564 4.7 13.6 1.0
O2A A:ADP1000 4.7 6.8 1.0
O3A A:ADP1000 4.7 6.8 1.0
CB A:ASP564 4.8 13.6 1.0
PA A:ADP1000 4.8 6.8 1.0
C A:MET540 4.9 9.3 1.0
CB A:MET540 4.9 9.3 1.0
CE2 A:TYR569 5.0 24.0 1.0

Magnesium binding site 2 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 2 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1001

b:20.4
occ:1.00
OG1 B:THR541 2.0 9.9 1.0
O1B B:ADP1000 2.3 29.6 1.0
CB B:THR541 3.3 9.9 1.0
OD2 B:ASP642 3.5 6.1 1.0
OD2 B:ASP564 3.6 10.7 1.0
PB B:ADP1000 3.7 29.6 1.0
O3B B:ADP1000 4.0 29.6 1.0
OH A:TYR717 4.0 18.3 1.0
N B:THR541 4.1 9.9 1.0
OD1 B:ASP642 4.1 6.1 1.0
CG B:ASP642 4.2 6.1 1.0
CA B:THR541 4.2 9.9 1.0
CG2 B:THR541 4.3 9.9 1.0
O1A B:ADP1000 4.4 29.6 1.0
CE B:MET540 4.5 9.2 1.0
O B:THR643 4.6 5.9 1.0
CG B:ASP564 4.6 10.7 1.0
O2B B:ADP1000 4.6 29.6 1.0
O2A B:ADP1000 4.7 29.6 1.0
O3A B:ADP1000 4.7 29.6 1.0
CB B:ASP564 4.8 10.7 1.0
PA B:ADP1000 4.8 29.6 1.0
CE2 B:TYR569 4.9 26.4 1.0

Magnesium binding site 3 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 3 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1001

b:14.4
occ:1.00
OG1 C:THR541 2.2 12.4 1.0
O1B C:ADP1000 2.3 29.6 1.0
CB C:THR541 3.5 12.4 1.0
OD2 C:ASP564 3.5 13.8 1.0
OD2 C:ASP642 3.6 6.7 1.0
PB C:ADP1000 3.7 29.6 1.0
OH B:TYR717 3.9 18.7 1.0
O3B C:ADP1000 4.0 29.6 1.0
OD1 C:ASP642 4.1 6.7 1.0
N C:THR541 4.2 12.4 1.0
CG C:ASP642 4.2 6.7 1.0
CA C:THR541 4.3 12.4 1.0
CE C:MET540 4.4 11.1 1.0
CG2 C:THR541 4.4 12.4 1.0
O1A C:ADP1000 4.4 29.6 1.0
O C:THR643 4.5 7.5 1.0
CG C:ASP564 4.5 13.8 1.0
O2B C:ADP1000 4.6 29.6 1.0
O2A C:ADP1000 4.7 29.6 1.0
O3A C:ADP1000 4.7 29.6 1.0
CB C:ASP564 4.7 13.8 1.0
PA C:ADP1000 4.8 29.6 1.0
CB C:MET540 5.0 11.1 1.0

Magnesium binding site 4 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 4 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1001

b:14.6
occ:1.00
OG1 D:THR541 2.1 10.7 1.0
O1B D:ADP1000 2.3 29.6 1.0
CB D:THR541 3.4 10.7 1.0
OD2 D:ASP642 3.4 7.9 1.0
OD2 D:ASP564 3.6 12.6 1.0
PB D:ADP1000 3.7 29.6 1.0
OD1 D:ASP642 3.9 7.9 1.0
OH C:TYR717 4.0 19.4 1.0
O3B D:ADP1000 4.0 29.6 1.0
CG D:ASP642 4.0 7.9 1.0
N D:THR541 4.0 10.7 1.0
CA D:THR541 4.2 10.7 1.0
CE D:MET540 4.3 9.9 1.0
O D:THR643 4.3 8.1 1.0
CG2 D:THR541 4.4 10.7 1.0
O1A D:ADP1000 4.4 29.6 1.0
CG D:ASP564 4.6 12.6 1.0
O2B D:ADP1000 4.6 29.6 1.0
O2A D:ADP1000 4.7 29.6 1.0
O3A D:ADP1000 4.7 29.6 1.0
CB D:ASP564 4.7 12.6 1.0
CB D:MET540 4.8 9.9 1.0
PA D:ADP1000 4.8 29.6 1.0
C D:MET540 4.9 9.9 1.0

Magnesium binding site 5 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 5 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1001

b:10.8
occ:1.00
OG1 E:THR541 2.2 7.5 1.0
O1B E:ADP1000 2.3 8.7 1.0
OD2 E:ASP564 3.4 12.0 1.0
CB E:THR541 3.5 7.5 1.0
OD2 E:ASP642 3.5 7.5 1.0
PB E:ADP1000 3.7 8.7 1.0
OH D:TYR717 3.9 19.5 1.0
O3B E:ADP1000 4.0 8.7 1.0
OD1 E:ASP642 4.2 7.5 1.0
CG E:ASP642 4.2 7.5 1.0
N E:THR541 4.3 7.5 1.0
CA E:THR541 4.4 7.5 1.0
CG2 E:THR541 4.4 7.5 1.0
O1A E:ADP1000 4.4 8.7 1.0
CG E:ASP564 4.4 12.0 1.0
CE E:MET540 4.5 8.2 1.0
O E:THR643 4.5 9.1 1.0
O2B E:ADP1000 4.6 8.7 1.0
CB E:ASP564 4.7 12.0 1.0
O2A E:ADP1000 4.7 8.7 1.0
O3A E:ADP1000 4.7 8.7 1.0
PA E:ADP1000 4.8 8.7 1.0
CE2 E:TYR569 5.0 22.2 1.0

Magnesium binding site 6 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 6 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1001

b:16.1
occ:1.00
OG1 F:THR541 2.1 8.0 1.0
O1B F:ADP1000 2.3 29.6 1.0
CB F:THR541 3.4 8.0 1.0
OD2 F:ASP564 3.5 10.3 1.0
OD2 F:ASP642 3.5 5.8 1.0
PB F:ADP1000 3.7 29.6 1.0
OH E:TYR717 3.9 19.2 1.0
O3B F:ADP1000 4.0 29.6 1.0
OD1 F:ASP642 4.1 5.8 1.0
CG F:ASP642 4.2 5.8 1.0
N F:THR541 4.2 8.0 1.0
CA F:THR541 4.3 8.0 1.0
CG2 F:THR541 4.4 8.0 1.0
O1A F:ADP1000 4.4 29.6 1.0
CE F:MET540 4.5 9.0 1.0
CG F:ASP564 4.5 10.3 1.0
O F:THR643 4.5 5.7 1.0
O2B F:ADP1000 4.6 29.6 1.0
O2A F:ADP1000 4.7 29.6 1.0
CB F:ASP564 4.7 10.3 1.0
O3A F:ADP1000 4.7 29.6 1.0
PA F:ADP1000 4.8 29.6 1.0
CE2 F:TYR569 5.0 26.1 1.0

Magnesium binding site 7 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 7 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg1001

b:10.1
occ:1.00
OG1 G:THR541 2.2 7.3 1.0
O1B G:ADP1000 2.3 7.2 1.0
CB G:THR541 3.4 7.3 1.0
OD2 G:ASP564 3.6 13.3 1.0
OD2 G:ASP642 3.6 7.7 1.0
PB G:ADP1000 3.7 7.2 1.0
OH F:TYR717 3.9 19.6 1.0
O3B G:ADP1000 4.0 7.2 1.0
N G:THR541 4.1 7.3 1.0
OD1 G:ASP642 4.2 7.7 1.0
CG G:ASP642 4.3 7.7 1.0
CA G:THR541 4.3 7.3 1.0
CG2 G:THR541 4.4 7.3 1.0
CE G:MET540 4.4 6.7 1.0
O1A G:ADP1000 4.4 7.2 1.0
O G:THR643 4.6 8.7 1.0
CG G:ASP564 4.6 13.3 1.0
O2B G:ADP1000 4.6 7.2 1.0
O2A G:ADP1000 4.7 7.2 1.0
O3A G:ADP1000 4.7 7.2 1.0
PA G:ADP1000 4.8 7.2 1.0
CB G:ASP564 4.8 13.3 1.0
CE2 G:TYR569 4.9 25.1 1.0
CB G:MET540 5.0 6.7 1.0

Magnesium binding site 8 out of 8 in 7nii

Go back to Magnesium Binding Sites List in 7nii
Magnesium binding site 8 out of 8 in the Wzc-K540M Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Wzc-K540M Mgadp C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg1001

b:14.0
occ:1.00
OG1 H:THR541 2.0 5.5 1.0
O1B H:ADP1000 2.3 7.6 1.0
CB H:THR541 3.3 5.5 1.0
OD2 H:ASP642 3.5 6.8 1.0
OD2 H:ASP564 3.6 11.3 1.0
PB H:ADP1000 3.7 7.6 1.0
O3B H:ADP1000 4.0 7.6 1.0
N H:THR541 4.0 5.5 1.0
OD1 H:ASP642 4.1 6.8 1.0
OH G:TYR717 4.1 19.7 1.0
CG H:ASP642 4.1 6.8 1.0
CA H:THR541 4.2 5.5 1.0
CG2 H:THR541 4.3 5.5 1.0
CE H:MET540 4.4 6.7 1.0
O1A H:ADP1000 4.4 7.6 1.0
O H:THR643 4.5 6.4 1.0
O2B H:ADP1000 4.6 7.6 1.0
CG H:ASP564 4.6 11.3 1.0
O2A H:ADP1000 4.7 7.6 1.0
O3A H:ADP1000 4.7 7.6 1.0
CB H:ASP564 4.8 11.3 1.0
PA H:ADP1000 4.8 7.6 1.0
CB H:MET540 4.9 6.7 1.0
C H:MET540 5.0 6.7 1.0
CE2 H:TYR569 5.0 23.6 1.0

Reference:

Y.Yang, J.Liu, B.R.Clarke, L.Seidel, J.R.Bolla, P.N.Ward, P.Zhang, C.V.Robinson, C.Whitfield, J.H.Naismith. The Molecular Basis of Regulation of Bacterial Capsule Assembly By Wzc. Nat Commun V. 12 4349 2021.
ISSN: ESSN 2041-1723
PubMed: 34272394
DOI: 10.1038/S41467-021-24652-1
Page generated: Thu Oct 3 02:05:06 2024

Last articles

Cl in 2Y1G
Cl in 2Y1F
Cl in 2Y05
Cl in 2Y1K
Cl in 2XZR
Cl in 2Y08
Cl in 2Y1D
Cl in 2XZ5
Cl in 2XZK
Cl in 2XZC
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy