Magnesium in PDB 7njm: Mycobacterium Smegmatis Atp Synthase State 1C
Enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 1C
All present enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 1C:
7.1.2.2;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Mycobacterium Smegmatis Atp Synthase State 1C
(pdb code 7njm). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Mycobacterium Smegmatis Atp Synthase State 1C, PDB code: 7njm:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 7njm
Go back to
Magnesium Binding Sites List in 7njm
Magnesium binding site 1 out
of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:44.0
occ:1.00
|
OG1
|
A:THR179
|
2.2
|
45.8
|
1.0
|
|
O
|
A:HOH702
|
2.2
|
48.8
|
1.0
|
|
O
|
A:HOH703
|
2.2
|
48.0
|
1.0
|
|
O2G
|
A:ATP600
|
2.2
|
47.8
|
1.0
|
|
O
|
A:HOH701
|
2.2
|
48.3
|
1.0
|
|
O2B
|
A:ATP600
|
2.2
|
47.8
|
1.0
|
|
HB
|
A:THR179
|
2.9
|
45.8
|
1.0
|
|
CB
|
A:THR179
|
3.1
|
45.8
|
1.0
|
|
O3B
|
A:ATP600
|
3.3
|
47.8
|
1.0
|
|
PB
|
A:ATP600
|
3.3
|
47.8
|
1.0
|
|
PG
|
A:ATP600
|
3.3
|
47.8
|
1.0
|
|
H
|
A:THR179
|
3.3
|
45.8
|
1.0
|
|
HG21
|
A:THR179
|
3.9
|
45.8
|
1.0
|
|
OD2
|
A:ASP272
|
4.0
|
44.7
|
1.0
|
|
N
|
A:THR179
|
4.0
|
45.8
|
1.0
|
|
OD1
|
A:ASP272
|
4.0
|
44.7
|
1.0
|
|
CA
|
A:THR179
|
4.1
|
45.8
|
1.0
|
|
O3G
|
A:ATP600
|
4.1
|
47.8
|
1.0
|
|
CG2
|
A:THR179
|
4.1
|
45.8
|
1.0
|
|
O3A
|
A:ATP600
|
4.3
|
47.8
|
1.0
|
|
O1B
|
A:ATP600
|
4.4
|
47.8
|
1.0
|
|
CG
|
A:ASP272
|
4.4
|
44.7
|
1.0
|
|
HB2
|
A:LYS178
|
4.4
|
46.1
|
1.0
|
|
HA
|
A:THR179
|
4.5
|
45.8
|
1.0
|
|
O1G
|
A:ATP600
|
4.5
|
47.8
|
1.0
|
|
O1A
|
A:ATP600
|
4.5
|
47.8
|
1.0
|
|
HE2
|
A:LYS178
|
4.5
|
46.1
|
1.0
|
|
HZ3
|
A:LYS178
|
4.6
|
46.1
|
1.0
|
|
HZ1
|
A:LYS178
|
4.7
|
46.1
|
1.0
|
|
HG22
|
A:THR179
|
4.7
|
45.8
|
1.0
|
|
PA
|
A:ATP600
|
4.8
|
47.8
|
1.0
|
|
HG23
|
A:THR179
|
4.8
|
45.8
|
1.0
|
|
O2A
|
A:ATP600
|
4.8
|
47.8
|
1.0
|
|
HG21
|
A:ILE329
|
4.9
|
44.4
|
1.0
|
|
NZ
|
A:LYS178
|
5.0
|
46.1
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 7njm
Go back to
Magnesium Binding Sites List in 7njm
Magnesium binding site 2 out
of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:51.7
occ:1.00
|
O2G
|
B:ATP600
|
2.2
|
52.4
|
1.0
|
|
O
|
B:HOH701
|
2.2
|
47.9
|
1.0
|
|
OG1
|
B:THR179
|
2.2
|
49.9
|
1.0
|
|
O2B
|
B:ATP600
|
2.2
|
52.4
|
1.0
|
|
O
|
B:HOH702
|
2.2
|
49.8
|
1.0
|
|
O
|
B:HOH703
|
2.2
|
53.3
|
1.0
|
|
HB
|
B:THR179
|
2.7
|
49.9
|
1.0
|
|
CB
|
B:THR179
|
3.0
|
49.9
|
1.0
|
|
PB
|
B:ATP600
|
3.4
|
52.4
|
1.0
|
|
PG
|
B:ATP600
|
3.4
|
52.4
|
1.0
|
|
H
|
B:THR179
|
3.5
|
49.9
|
1.0
|
|
O3B
|
B:ATP600
|
3.5
|
52.4
|
1.0
|
|
HG21
|
B:THR179
|
3.7
|
49.9
|
1.0
|
|
OD2
|
B:ASP272
|
3.7
|
46.9
|
1.0
|
|
CG2
|
B:THR179
|
3.9
|
49.9
|
1.0
|
|
OD1
|
B:ASP272
|
4.0
|
46.9
|
1.0
|
|
N
|
B:THR179
|
4.1
|
49.9
|
1.0
|
|
CA
|
B:THR179
|
4.1
|
49.9
|
1.0
|
|
OE1
|
B:GLN211
|
4.2
|
47.6
|
1.0
|
|
O1G
|
B:ATP600
|
4.2
|
52.4
|
1.0
|
|
CG
|
B:ASP272
|
4.3
|
46.9
|
1.0
|
|
O1A
|
B:ATP600
|
4.3
|
52.4
|
1.0
|
|
O3A
|
B:ATP600
|
4.3
|
52.4
|
1.0
|
|
O1B
|
B:ATP600
|
4.4
|
52.4
|
1.0
|
|
HG22
|
B:THR179
|
4.5
|
49.9
|
1.0
|
|
O3G
|
B:ATP600
|
4.5
|
52.4
|
1.0
|
|
HA
|
B:THR179
|
4.5
|
49.9
|
1.0
|
|
HG23
|
B:THR179
|
4.6
|
49.9
|
1.0
|
|
PA
|
B:ATP600
|
4.7
|
52.4
|
1.0
|
|
HB2
|
B:LYS178
|
4.7
|
49.5
|
1.0
|
|
O2A
|
B:ATP600
|
4.8
|
52.4
|
1.0
|
|
HH
|
B:TYR206
|
5.0
|
45.7
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 7njm
Go back to
Magnesium Binding Sites List in 7njm
Magnesium binding site 3 out
of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:47.3
occ:1.00
|
OG1
|
C:THR179
|
2.2
|
47.5
|
1.0
|
|
O2G
|
C:ATP600
|
2.2
|
48.8
|
1.0
|
|
O
|
C:HOH703
|
2.2
|
47.9
|
1.0
|
|
O2B
|
C:ATP600
|
2.2
|
48.8
|
1.0
|
|
O
|
C:HOH702
|
2.2
|
48.0
|
1.0
|
|
O
|
C:HOH701
|
2.2
|
45.9
|
1.0
|
|
HB
|
C:THR179
|
3.1
|
47.5
|
1.0
|
|
CB
|
C:THR179
|
3.2
|
47.5
|
1.0
|
|
H
|
C:THR179
|
3.3
|
47.5
|
1.0
|
|
PB
|
C:ATP600
|
3.3
|
48.8
|
1.0
|
|
O3B
|
C:ATP600
|
3.4
|
48.8
|
1.0
|
|
PG
|
C:ATP600
|
3.4
|
48.8
|
1.0
|
|
N
|
C:THR179
|
4.0
|
47.5
|
1.0
|
|
HG21
|
C:THR179
|
4.0
|
47.5
|
1.0
|
|
OD2
|
C:ASP272
|
4.1
|
47.1
|
1.0
|
|
OD1
|
C:ASP272
|
4.1
|
47.1
|
1.0
|
|
O3G
|
C:ATP600
|
4.2
|
48.8
|
1.0
|
|
CA
|
C:THR179
|
4.2
|
47.5
|
1.0
|
|
HB2
|
C:LYS178
|
4.2
|
47.1
|
1.0
|
|
O1A
|
C:ATP600
|
4.2
|
48.8
|
1.0
|
|
CG2
|
C:THR179
|
4.2
|
47.5
|
1.0
|
|
O3A
|
C:ATP600
|
4.3
|
48.8
|
1.0
|
|
HE2
|
C:LYS178
|
4.4
|
47.1
|
1.0
|
|
O1B
|
C:ATP600
|
4.4
|
48.8
|
1.0
|
|
O1G
|
C:ATP600
|
4.5
|
48.8
|
1.0
|
|
CG
|
C:ASP272
|
4.5
|
47.1
|
1.0
|
|
HA
|
C:THR179
|
4.6
|
47.5
|
1.0
|
|
PA
|
C:ATP600
|
4.6
|
48.8
|
1.0
|
|
HG23
|
C:THR179
|
4.8
|
47.5
|
1.0
|
|
O2A
|
C:ATP600
|
4.8
|
48.8
|
1.0
|
|
HE21
|
C:GLN211
|
4.8
|
48.5
|
1.0
|
|
HE22
|
C:GLN211
|
4.8
|
48.5
|
1.0
|
|
HG22
|
C:THR179
|
4.9
|
47.5
|
1.0
|
|
HG21
|
C:ILE329
|
5.0
|
46.1
|
1.0
|
|
NE2
|
C:GLN211
|
5.0
|
48.5
|
1.0
|
|
H
|
C:LYS178
|
5.0
|
47.1
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 7njm
Go back to
Magnesium Binding Sites List in 7njm
Magnesium binding site 4 out
of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:47.6
occ:1.00
|
OG1
|
D:THR167
|
2.2
|
47.9
|
1.0
|
|
O
|
D:HOH703
|
2.2
|
48.8
|
1.0
|
|
O
|
D:HOH702
|
2.2
|
46.2
|
1.0
|
|
O
|
D:HOH701
|
2.2
|
51.6
|
1.0
|
|
O2B
|
D:ADP600
|
2.2
|
48.4
|
1.0
|
|
O
|
D:HOH704
|
2.2
|
51.2
|
1.0
|
|
HH12
|
D:ARG193
|
3.0
|
47.3
|
1.0
|
|
HB
|
D:THR167
|
3.1
|
47.9
|
1.0
|
|
OE2
|
D:GLU192
|
3.1
|
49.0
|
1.0
|
|
CB
|
D:THR167
|
3.2
|
47.9
|
1.0
|
|
PB
|
D:ADP600
|
3.3
|
48.4
|
1.0
|
|
H
|
D:THR167
|
3.5
|
47.9
|
1.0
|
|
NH1
|
D:ARG193
|
3.7
|
47.3
|
1.0
|
|
OE2
|
D:GLU196
|
3.7
|
48.4
|
1.0
|
|
HH11
|
D:ARG193
|
3.7
|
47.3
|
1.0
|
|
O3A
|
D:ADP600
|
3.7
|
48.4
|
1.0
|
|
O3B
|
D:ADP600
|
3.7
|
48.4
|
1.0
|
|
OE1
|
D:GLU196
|
3.8
|
48.4
|
1.0
|
|
HH11
|
C:ARG376
|
3.8
|
47.5
|
1.0
|
|
HH12
|
C:ARG376
|
3.9
|
47.5
|
1.0
|
|
HG21
|
D:THR167
|
4.0
|
47.9
|
1.0
|
|
N
|
D:THR167
|
4.1
|
47.9
|
1.0
|
|
CD
|
D:GLU196
|
4.2
|
48.4
|
1.0
|
|
CA
|
D:THR167
|
4.2
|
47.9
|
1.0
|
|
NH1
|
C:ARG376
|
4.2
|
47.5
|
1.0
|
|
O2A
|
D:ADP600
|
4.2
|
48.4
|
1.0
|
|
CG2
|
D:THR167
|
4.2
|
47.9
|
1.0
|
|
HB2
|
D:LYS166
|
4.3
|
46.9
|
1.0
|
|
PA
|
D:ADP600
|
4.3
|
48.4
|
1.0
|
|
OD2
|
D:ASP254
|
4.4
|
47.3
|
1.0
|
|
CD
|
D:GLU192
|
4.4
|
49.0
|
1.0
|
|
HA
|
D:THR167
|
4.4
|
47.9
|
1.0
|
|
O1A
|
D:ADP600
|
4.4
|
48.4
|
1.0
|
|
HE2
|
D:LYS166
|
4.5
|
46.9
|
1.0
|
|
OD1
|
D:ASP254
|
4.5
|
47.3
|
1.0
|
|
O1B
|
D:ADP600
|
4.7
|
48.4
|
1.0
|
|
HG23
|
D:THR167
|
4.8
|
47.9
|
1.0
|
|
HG22
|
D:THR167
|
4.8
|
47.9
|
1.0
|
|
HH22
|
D:ARG193
|
4.8
|
47.3
|
1.0
|
|
CZ
|
D:ARG193
|
4.9
|
47.3
|
1.0
|
|
CG
|
D:ASP254
|
4.9
|
47.3
|
1.0
|
|
HD22
|
D:ASN255
|
5.0
|
46.4
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 7njm
Go back to
Magnesium Binding Sites List in 7njm
Magnesium binding site 5 out
of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg601
b:46.1
occ:1.00
|
O2G
|
F:ATP600
|
2.2
|
49.1
|
1.0
|
|
OG1
|
F:THR167
|
2.2
|
47.2
|
1.0
|
|
O2B
|
F:ATP600
|
2.2
|
49.1
|
1.0
|
|
O
|
F:HOH702
|
2.2
|
50.3
|
1.0
|
|
O
|
F:HOH703
|
2.2
|
47.5
|
1.0
|
|
O
|
F:HOH701
|
2.2
|
51.1
|
1.0
|
|
HB
|
F:THR167
|
3.0
|
47.2
|
1.0
|
|
HH12
|
F:ARG193
|
3.1
|
49.2
|
1.0
|
|
CB
|
F:THR167
|
3.2
|
47.2
|
1.0
|
|
OE1
|
F:GLU192
|
3.2
|
50.3
|
1.0
|
|
PB
|
F:ATP600
|
3.4
|
49.1
|
1.0
|
|
H
|
F:THR167
|
3.4
|
47.2
|
1.0
|
|
PG
|
F:ATP600
|
3.4
|
49.1
|
1.0
|
|
O3B
|
F:ATP600
|
3.4
|
49.1
|
1.0
|
|
OE2
|
F:GLU196
|
3.6
|
50.2
|
1.0
|
|
NH1
|
F:ARG193
|
3.8
|
49.2
|
1.0
|
|
N
|
F:THR167
|
4.0
|
47.2
|
1.0
|
|
HH11
|
F:ARG193
|
4.0
|
49.2
|
1.0
|
|
HB2
|
F:LYS166
|
4.0
|
46.2
|
1.0
|
|
HG21
|
F:THR167
|
4.0
|
47.2
|
1.0
|
|
O2A
|
F:ATP600
|
4.0
|
49.1
|
1.0
|
|
HH12
|
B:ARG376
|
4.1
|
51.8
|
1.0
|
|
OE1
|
F:GLU196
|
4.1
|
50.2
|
1.0
|
|
CA
|
F:THR167
|
4.1
|
47.2
|
1.0
|
|
HE2
|
F:LYS166
|
4.1
|
46.2
|
1.0
|
|
CG2
|
F:THR167
|
4.2
|
47.2
|
1.0
|
|
CD
|
F:GLU196
|
4.2
|
50.2
|
1.0
|
|
O3A
|
F:ATP600
|
4.3
|
49.1
|
1.0
|
|
OD2
|
F:ASP254
|
4.3
|
47.9
|
1.0
|
|
O3G
|
F:ATP600
|
4.3
|
49.1
|
1.0
|
|
O1G
|
F:ATP600
|
4.4
|
49.1
|
1.0
|
|
HA
|
F:THR167
|
4.4
|
47.2
|
1.0
|
|
O1B
|
F:ATP600
|
4.5
|
49.1
|
1.0
|
|
CD
|
F:GLU192
|
4.5
|
50.3
|
1.0
|
|
PA
|
F:ATP600
|
4.6
|
49.1
|
1.0
|
|
OD1
|
F:ASP254
|
4.7
|
47.9
|
1.0
|
|
HH22
|
F:ARG193
|
4.7
|
49.2
|
1.0
|
|
NH1
|
B:ARG376
|
4.8
|
51.8
|
1.0
|
|
O1A
|
F:ATP600
|
4.8
|
49.1
|
1.0
|
|
HG23
|
F:THR167
|
4.8
|
47.2
|
1.0
|
|
HH11
|
B:ARG376
|
4.9
|
51.8
|
1.0
|
|
HG22
|
F:THR167
|
4.9
|
47.2
|
1.0
|
|
CB
|
F:LYS166
|
4.9
|
46.2
|
1.0
|
|
CZ
|
F:ARG193
|
4.9
|
49.2
|
1.0
|
|
CG
|
F:ASP254
|
4.9
|
47.9
|
1.0
|
|
Reference:
J.Petri,
M.G.Montgomery,
T.J.Spikes,
G.M.Cook,
J.E.Walker.
Structure of the Atp Synthase From Mycobacterium Smegmatis To Be Published.
Page generated: Thu Oct 3 02:05:10 2024
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