Magnesium in PDB 7njm: Mycobacterium Smegmatis Atp Synthase State 1C

Enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 1C

All present enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 1C:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Smegmatis Atp Synthase State 1C (pdb code 7njm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Mycobacterium Smegmatis Atp Synthase State 1C, PDB code: 7njm:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7njm

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Magnesium binding site 1 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:44.0
occ:1.00
OG1 A:THR179 2.2 45.8 1.0
O A:HOH702 2.2 48.8 1.0
O A:HOH703 2.2 48.0 1.0
O2G A:ATP600 2.2 47.8 1.0
O A:HOH701 2.2 48.3 1.0
O2B A:ATP600 2.2 47.8 1.0
HB A:THR179 2.9 45.8 1.0
CB A:THR179 3.1 45.8 1.0
O3B A:ATP600 3.3 47.8 1.0
PB A:ATP600 3.3 47.8 1.0
PG A:ATP600 3.3 47.8 1.0
H A:THR179 3.3 45.8 1.0
HG21 A:THR179 3.9 45.8 1.0
OD2 A:ASP272 4.0 44.7 1.0
N A:THR179 4.0 45.8 1.0
OD1 A:ASP272 4.0 44.7 1.0
CA A:THR179 4.1 45.8 1.0
O3G A:ATP600 4.1 47.8 1.0
CG2 A:THR179 4.1 45.8 1.0
O3A A:ATP600 4.3 47.8 1.0
O1B A:ATP600 4.4 47.8 1.0
CG A:ASP272 4.4 44.7 1.0
HB2 A:LYS178 4.4 46.1 1.0
HA A:THR179 4.5 45.8 1.0
O1G A:ATP600 4.5 47.8 1.0
O1A A:ATP600 4.5 47.8 1.0
HE2 A:LYS178 4.5 46.1 1.0
HZ3 A:LYS178 4.6 46.1 1.0
HZ1 A:LYS178 4.7 46.1 1.0
HG22 A:THR179 4.7 45.8 1.0
PA A:ATP600 4.8 47.8 1.0
HG23 A:THR179 4.8 45.8 1.0
O2A A:ATP600 4.8 47.8 1.0
HG21 A:ILE329 4.9 44.4 1.0
NZ A:LYS178 5.0 46.1 1.0

Magnesium binding site 2 out of 5 in 7njm

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Magnesium binding site 2 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:51.7
occ:1.00
O2G B:ATP600 2.2 52.4 1.0
O B:HOH701 2.2 47.9 1.0
OG1 B:THR179 2.2 49.9 1.0
O2B B:ATP600 2.2 52.4 1.0
O B:HOH702 2.2 49.8 1.0
O B:HOH703 2.2 53.3 1.0
HB B:THR179 2.7 49.9 1.0
CB B:THR179 3.0 49.9 1.0
PB B:ATP600 3.4 52.4 1.0
PG B:ATP600 3.4 52.4 1.0
H B:THR179 3.5 49.9 1.0
O3B B:ATP600 3.5 52.4 1.0
HG21 B:THR179 3.7 49.9 1.0
OD2 B:ASP272 3.7 46.9 1.0
CG2 B:THR179 3.9 49.9 1.0
OD1 B:ASP272 4.0 46.9 1.0
N B:THR179 4.1 49.9 1.0
CA B:THR179 4.1 49.9 1.0
OE1 B:GLN211 4.2 47.6 1.0
O1G B:ATP600 4.2 52.4 1.0
CG B:ASP272 4.3 46.9 1.0
O1A B:ATP600 4.3 52.4 1.0
O3A B:ATP600 4.3 52.4 1.0
O1B B:ATP600 4.4 52.4 1.0
HG22 B:THR179 4.5 49.9 1.0
O3G B:ATP600 4.5 52.4 1.0
HA B:THR179 4.5 49.9 1.0
HG23 B:THR179 4.6 49.9 1.0
PA B:ATP600 4.7 52.4 1.0
HB2 B:LYS178 4.7 49.5 1.0
O2A B:ATP600 4.8 52.4 1.0
HH B:TYR206 5.0 45.7 1.0

Magnesium binding site 3 out of 5 in 7njm

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Magnesium binding site 3 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:47.3
occ:1.00
OG1 C:THR179 2.2 47.5 1.0
O2G C:ATP600 2.2 48.8 1.0
O C:HOH703 2.2 47.9 1.0
O2B C:ATP600 2.2 48.8 1.0
O C:HOH702 2.2 48.0 1.0
O C:HOH701 2.2 45.9 1.0
HB C:THR179 3.1 47.5 1.0
CB C:THR179 3.2 47.5 1.0
H C:THR179 3.3 47.5 1.0
PB C:ATP600 3.3 48.8 1.0
O3B C:ATP600 3.4 48.8 1.0
PG C:ATP600 3.4 48.8 1.0
N C:THR179 4.0 47.5 1.0
HG21 C:THR179 4.0 47.5 1.0
OD2 C:ASP272 4.1 47.1 1.0
OD1 C:ASP272 4.1 47.1 1.0
O3G C:ATP600 4.2 48.8 1.0
CA C:THR179 4.2 47.5 1.0
HB2 C:LYS178 4.2 47.1 1.0
O1A C:ATP600 4.2 48.8 1.0
CG2 C:THR179 4.2 47.5 1.0
O3A C:ATP600 4.3 48.8 1.0
HE2 C:LYS178 4.4 47.1 1.0
O1B C:ATP600 4.4 48.8 1.0
O1G C:ATP600 4.5 48.8 1.0
CG C:ASP272 4.5 47.1 1.0
HA C:THR179 4.6 47.5 1.0
PA C:ATP600 4.6 48.8 1.0
HG23 C:THR179 4.8 47.5 1.0
O2A C:ATP600 4.8 48.8 1.0
HE21 C:GLN211 4.8 48.5 1.0
HE22 C:GLN211 4.8 48.5 1.0
HG22 C:THR179 4.9 47.5 1.0
HG21 C:ILE329 5.0 46.1 1.0
NE2 C:GLN211 5.0 48.5 1.0
H C:LYS178 5.0 47.1 1.0

Magnesium binding site 4 out of 5 in 7njm

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Magnesium binding site 4 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:47.6
occ:1.00
OG1 D:THR167 2.2 47.9 1.0
O D:HOH703 2.2 48.8 1.0
O D:HOH702 2.2 46.2 1.0
O D:HOH701 2.2 51.6 1.0
O2B D:ADP600 2.2 48.4 1.0
O D:HOH704 2.2 51.2 1.0
HH12 D:ARG193 3.0 47.3 1.0
HB D:THR167 3.1 47.9 1.0
OE2 D:GLU192 3.1 49.0 1.0
CB D:THR167 3.2 47.9 1.0
PB D:ADP600 3.3 48.4 1.0
H D:THR167 3.5 47.9 1.0
NH1 D:ARG193 3.7 47.3 1.0
OE2 D:GLU196 3.7 48.4 1.0
HH11 D:ARG193 3.7 47.3 1.0
O3A D:ADP600 3.7 48.4 1.0
O3B D:ADP600 3.7 48.4 1.0
OE1 D:GLU196 3.8 48.4 1.0
HH11 C:ARG376 3.8 47.5 1.0
HH12 C:ARG376 3.9 47.5 1.0
HG21 D:THR167 4.0 47.9 1.0
N D:THR167 4.1 47.9 1.0
CD D:GLU196 4.2 48.4 1.0
CA D:THR167 4.2 47.9 1.0
NH1 C:ARG376 4.2 47.5 1.0
O2A D:ADP600 4.2 48.4 1.0
CG2 D:THR167 4.2 47.9 1.0
HB2 D:LYS166 4.3 46.9 1.0
PA D:ADP600 4.3 48.4 1.0
OD2 D:ASP254 4.4 47.3 1.0
CD D:GLU192 4.4 49.0 1.0
HA D:THR167 4.4 47.9 1.0
O1A D:ADP600 4.4 48.4 1.0
HE2 D:LYS166 4.5 46.9 1.0
OD1 D:ASP254 4.5 47.3 1.0
O1B D:ADP600 4.7 48.4 1.0
HG23 D:THR167 4.8 47.9 1.0
HG22 D:THR167 4.8 47.9 1.0
HH22 D:ARG193 4.8 47.3 1.0
CZ D:ARG193 4.9 47.3 1.0
CG D:ASP254 4.9 47.3 1.0
HD22 D:ASN255 5.0 46.4 1.0

Magnesium binding site 5 out of 5 in 7njm

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Magnesium binding site 5 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 1C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Mycobacterium Smegmatis Atp Synthase State 1C within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:46.1
occ:1.00
O2G F:ATP600 2.2 49.1 1.0
OG1 F:THR167 2.2 47.2 1.0
O2B F:ATP600 2.2 49.1 1.0
O F:HOH702 2.2 50.3 1.0
O F:HOH703 2.2 47.5 1.0
O F:HOH701 2.2 51.1 1.0
HB F:THR167 3.0 47.2 1.0
HH12 F:ARG193 3.1 49.2 1.0
CB F:THR167 3.2 47.2 1.0
OE1 F:GLU192 3.2 50.3 1.0
PB F:ATP600 3.4 49.1 1.0
H F:THR167 3.4 47.2 1.0
PG F:ATP600 3.4 49.1 1.0
O3B F:ATP600 3.4 49.1 1.0
OE2 F:GLU196 3.6 50.2 1.0
NH1 F:ARG193 3.8 49.2 1.0
N F:THR167 4.0 47.2 1.0
HH11 F:ARG193 4.0 49.2 1.0
HB2 F:LYS166 4.0 46.2 1.0
HG21 F:THR167 4.0 47.2 1.0
O2A F:ATP600 4.0 49.1 1.0
HH12 B:ARG376 4.1 51.8 1.0
OE1 F:GLU196 4.1 50.2 1.0
CA F:THR167 4.1 47.2 1.0
HE2 F:LYS166 4.1 46.2 1.0
CG2 F:THR167 4.2 47.2 1.0
CD F:GLU196 4.2 50.2 1.0
O3A F:ATP600 4.3 49.1 1.0
OD2 F:ASP254 4.3 47.9 1.0
O3G F:ATP600 4.3 49.1 1.0
O1G F:ATP600 4.4 49.1 1.0
HA F:THR167 4.4 47.2 1.0
O1B F:ATP600 4.5 49.1 1.0
CD F:GLU192 4.5 50.3 1.0
PA F:ATP600 4.6 49.1 1.0
OD1 F:ASP254 4.7 47.9 1.0
HH22 F:ARG193 4.7 49.2 1.0
NH1 B:ARG376 4.8 51.8 1.0
O1A F:ATP600 4.8 49.1 1.0
HG23 F:THR167 4.8 47.2 1.0
HH11 B:ARG376 4.9 51.8 1.0
HG22 F:THR167 4.9 47.2 1.0
CB F:LYS166 4.9 46.2 1.0
CZ F:ARG193 4.9 49.2 1.0
CG F:ASP254 4.9 47.9 1.0

Reference:

J.Petri, M.G.Montgomery, T.J.Spikes, G.M.Cook, J.E.Walker. Structure of the Atp Synthase From Mycobacterium Smegmatis To Be Published.
Page generated: Fri Nov 5 15:25:09 2021

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