Magnesium in PDB 7njr: Mycobacterium Smegmatis Atp Synthase State 3B

Enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 3B

All present enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 3B:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Smegmatis Atp Synthase State 3B (pdb code 7njr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Mycobacterium Smegmatis Atp Synthase State 3B, PDB code: 7njr:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7njr

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Magnesium binding site 1 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Smegmatis Atp Synthase State 3B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:40.0
occ:1.00
O2G A:ATP600 2.2 42.9 1.0
O A:HOH701 2.2 41.7 1.0
O A:HOH703 2.2 42.7 1.0
O2B A:ATP600 2.2 42.9 1.0
OG1 A:THR179 2.2 42.4 1.0
O A:HOH702 2.2 45.5 1.0
HB A:THR179 3.1 42.4 1.0
CB A:THR179 3.2 42.4 1.0
PB A:ATP600 3.3 42.9 1.0
O3B A:ATP600 3.4 42.9 1.0
H A:THR179 3.4 42.4 1.0
PG A:ATP600 3.4 42.9 1.0
OD2 A:ASP272 4.0 42.3 1.0
HG21 A:THR179 4.0 42.4 1.0
N A:THR179 4.0 42.4 1.0
O2A A:ATP600 4.1 42.9 1.0
OD1 A:ASP272 4.1 42.3 1.0
CG2 A:THR179 4.2 42.4 1.0
CA A:THR179 4.2 42.4 1.0
O3A A:ATP600 4.2 42.9 1.0
O3G A:ATP600 4.2 42.9 1.0
HB2 A:LYS178 4.4 42.1 1.0
O1G A:ATP600 4.4 42.9 1.0
O1B A:ATP600 4.4 42.9 1.0
CG A:ASP272 4.5 42.3 1.0
PA A:ATP600 4.6 42.9 1.0
HE2 A:LYS178 4.6 42.1 1.0
HA A:THR179 4.6 42.4 1.0
O1A A:ATP600 4.7 42.9 1.0
HG23 A:THR179 4.8 42.4 1.0
HG22 A:THR179 4.9 42.4 1.0
HZ3 A:LYS178 5.0 42.1 1.0

Magnesium binding site 2 out of 5 in 7njr

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Magnesium binding site 2 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Smegmatis Atp Synthase State 3B within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:45.5
occ:1.00
O2G B:ATP600 2.2 47.3 1.0
OG1 B:THR179 2.2 44.5 1.0
O2B B:ATP600 2.2 47.3 1.0
O B:HOH703 2.2 46.2 1.0
O B:HOH701 2.2 47.4 1.0
O B:HOH702 2.2 44.9 1.0
HB B:THR179 3.0 44.5 1.0
CB B:THR179 3.1 44.5 1.0
PB B:ATP600 3.3 47.3 1.0
O3B B:ATP600 3.4 47.3 1.0
PG B:ATP600 3.4 47.3 1.0
H B:THR179 3.4 44.5 1.0
OD2 B:ASP272 3.6 42.5 1.0
HG21 B:THR179 4.0 44.5 1.0
OD1 B:ASP272 4.0 42.5 1.0
N B:THR179 4.0 44.5 1.0
CG2 B:THR179 4.2 44.5 1.0
CA B:THR179 4.2 44.5 1.0
CG B:ASP272 4.3 42.5 1.0
O1A B:ATP600 4.3 47.3 1.0
O3G B:ATP600 4.3 47.3 1.0
O3A B:ATP600 4.3 47.3 1.0
O1B B:ATP600 4.4 47.3 1.0
O1G B:ATP600 4.4 47.3 1.0
HB2 B:LYS178 4.4 44.5 1.0
OE1 B:GLN211 4.4 43.7 1.0
HG21 B:THR215 4.4 46.0 1.0
HE2 B:LYS178 4.5 44.5 1.0
HA B:THR179 4.5 44.5 1.0
PA B:ATP600 4.6 47.3 1.0
O2A B:ATP600 4.7 47.3 1.0
HG23 B:THR179 4.8 44.5 1.0
HG22 B:THR179 4.8 44.5 1.0

Magnesium binding site 3 out of 5 in 7njr

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Magnesium binding site 3 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mycobacterium Smegmatis Atp Synthase State 3B within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:39.5
occ:1.00
O2G C:ATP600 2.2 42.8 1.0
O C:HOH702 2.2 41.2 1.0
OG1 C:THR179 2.2 41.8 1.0
O C:HOH703 2.2 45.0 1.0
O2B C:ATP600 2.2 42.8 1.0
O C:HOH701 2.2 41.2 1.0
HB C:THR179 2.9 41.8 1.0
CB C:THR179 3.1 41.8 1.0
H C:THR179 3.4 41.8 1.0
PB C:ATP600 3.4 42.8 1.0
PG C:ATP600 3.4 42.8 1.0
O3B C:ATP600 3.4 42.8 1.0
HG21 C:THR179 3.9 41.8 1.0
OD2 C:ASP272 4.0 42.4 1.0
N C:THR179 4.1 41.8 1.0
CG2 C:THR179 4.1 41.8 1.0
OD1 C:ASP272 4.1 42.4 1.0
CA C:THR179 4.2 41.8 1.0
O1A C:ATP600 4.2 42.8 1.0
O3A C:ATP600 4.3 42.8 1.0
O1G C:ATP600 4.3 42.8 1.0
O3G C:ATP600 4.4 42.8 1.0
O1B C:ATP600 4.4 42.8 1.0
CG C:ASP272 4.5 42.4 1.0
HB2 C:LYS178 4.5 42.1 1.0
HA C:THR179 4.5 41.8 1.0
PA C:ATP600 4.6 42.8 1.0
HE2 C:LYS178 4.7 42.1 1.0
HG22 C:THR179 4.7 41.8 1.0
HG23 C:THR179 4.7 41.8 1.0
O2A C:ATP600 4.7 42.8 1.0
HD13 C:ILE329 5.0 41.6 1.0

Magnesium binding site 4 out of 5 in 7njr

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Magnesium binding site 4 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mycobacterium Smegmatis Atp Synthase State 3B within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:43.4
occ:1.00
OG1 D:THR167 2.2 43.2 1.0
O D:HOH701 2.2 44.5 1.0
O D:HOH703 2.2 45.0 1.0
O D:HOH702 2.2 42.5 1.0
O2B D:ADP600 2.2 43.2 1.0
O D:HOH704 2.2 42.4 1.0
HB D:THR167 3.1 43.2 1.0
HH12 D:ARG193 3.2 43.3 1.0
CB D:THR167 3.2 43.2 1.0
PB D:ADP600 3.4 43.2 1.0
H D:THR167 3.5 43.2 1.0
HH11 D:ARG193 3.7 43.3 1.0
OE1 D:GLU192 3.7 45.1 1.0
O3B D:ADP600 3.7 43.2 1.0
NH1 D:ARG193 3.7 43.3 1.0
O3A D:ADP600 3.8 43.2 1.0
OE2 D:GLU196 3.9 44.2 1.0
OE1 D:GLU196 4.0 44.2 1.0
HG21 D:THR167 4.0 43.2 1.0
N D:THR167 4.1 43.2 1.0
HB2 D:LYS166 4.1 42.2 1.0
O2A D:ADP600 4.1 43.2 1.0
HH11 C:ARG376 4.2 43.0 1.0
CA D:THR167 4.2 43.2 1.0
CG2 D:THR167 4.3 43.2 1.0
PA D:ADP600 4.3 43.2 1.0
HE2 D:LYS166 4.3 42.2 1.0
O1A D:ADP600 4.3 43.2 1.0
OD2 D:ASP254 4.3 44.1 1.0
CD D:GLU196 4.4 44.2 1.0
CD D:GLU192 4.4 45.1 1.0
HH12 C:ARG376 4.4 43.0 1.0
OD1 D:ASP254 4.4 44.1 1.0
HA D:THR167 4.5 43.2 1.0
NH1 C:ARG376 4.5 43.0 1.0
O1B D:ADP600 4.7 43.2 1.0
OE2 D:GLU192 4.8 45.1 1.0
HG23 D:THR167 4.8 43.2 1.0
CG D:ASP254 4.8 44.1 1.0
HG3 D:GLU192 4.8 45.1 1.0
CZ D:ARG193 4.9 43.3 1.0
HG22 D:THR167 4.9 43.2 1.0
CB D:LYS166 4.9 42.2 1.0

Magnesium binding site 5 out of 5 in 7njr

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Magnesium binding site 5 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Mycobacterium Smegmatis Atp Synthase State 3B within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:40.5
occ:1.00
OG1 F:THR167 2.2 42.0 1.0
O F:HOH702 2.2 42.5 1.0
O2G F:ATP600 2.2 43.2 1.0
O2B F:ATP600 2.2 43.2 1.0
O F:HOH703 2.2 41.3 1.0
O F:HOH701 2.2 43.1 1.0
HB F:THR167 3.0 42.0 1.0
HH12 F:ARG193 3.1 41.7 1.0
CB F:THR167 3.1 42.0 1.0
PB F:ATP600 3.4 43.2 1.0
O3B F:ATP600 3.4 43.2 1.0
H F:THR167 3.4 42.0 1.0
PG F:ATP600 3.4 43.2 1.0
NH1 F:ARG193 3.7 41.7 1.0
HH11 F:ARG193 3.7 41.7 1.0
OE2 F:GLU196 3.8 43.3 1.0
N F:THR167 4.0 42.0 1.0
HB2 F:LYS166 4.0 41.3 1.0
HG21 F:THR167 4.1 42.0 1.0
HH12 B:ARG376 4.1 44.9 1.0
O2A F:ATP600 4.1 43.2 1.0
OE1 F:GLU196 4.1 43.3 1.0
CA F:THR167 4.1 42.0 1.0
HE2 F:LYS166 4.1 41.3 1.0
CG2 F:THR167 4.2 42.0 1.0
OE1 F:GLU192 4.2 43.2 1.0
O3A F:ATP600 4.3 43.2 1.0
O3G F:ATP600 4.3 43.2 1.0
CD F:GLU196 4.3 43.3 1.0
O1G F:ATP600 4.4 43.2 1.0
HA F:THR167 4.4 42.0 1.0
O1B F:ATP600 4.4 43.2 1.0
OD2 F:ASP254 4.5 43.0 1.0
OD1 F:ASP254 4.6 43.0 1.0
PA F:ATP600 4.6 43.2 1.0
CD F:GLU192 4.6 43.2 1.0
NH1 B:ARG376 4.8 44.9 1.0
HG3 F:GLU192 4.8 43.2 1.0
HG23 F:THR167 4.8 42.0 1.0
HH11 B:ARG376 4.8 44.9 1.0
HG22 F:THR167 4.9 42.0 1.0
CZ F:ARG193 4.9 41.7 1.0
O1A F:ATP600 4.9 43.2 1.0
HH22 F:ARG193 4.9 41.7 1.0
CB F:LYS166 5.0 41.3 1.0
HZ1 F:LYS166 5.0 41.3 1.0

Reference:

J.Petri, M.G.Montgomery, T.J.Spikes, G.M.Cook, J.E.Walker. Structure of the Atp Synthase From Mycobacterium Smegmatis To Be Published.
Page generated: Fri Nov 5 15:25:09 2021

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