Atomistry » Magnesium » PDB 7ni7-7nrw » 7njs
Atomistry »
  Magnesium »
    PDB 7ni7-7nrw »
      7njs »

Magnesium in PDB 7njs: Mycobacterium Smegmatis Atp Synthase State 3C

Enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 3C

All present enzymatic activity of Mycobacterium Smegmatis Atp Synthase State 3C:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Smegmatis Atp Synthase State 3C (pdb code 7njs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Mycobacterium Smegmatis Atp Synthase State 3C, PDB code: 7njs:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7njs

Go back to Magnesium Binding Sites List in 7njs
Magnesium binding site 1 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Smegmatis Atp Synthase State 3C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:42.4
occ:1.00
O A:HOH701 2.2 43.9 1.0
OG1 A:THR179 2.2 43.7 1.0
O2G A:ATP600 2.2 45.3 1.0
O2B A:ATP600 2.2 45.3 1.0
O A:HOH703 2.2 44.9 1.0
O A:HOH702 2.2 45.7 1.0
HB A:THR179 3.0 43.7 1.0
CB A:THR179 3.2 43.7 1.0
H A:THR179 3.3 43.7 1.0
PB A:ATP600 3.3 45.3 1.0
O3B A:ATP600 3.4 45.3 1.0
PG A:ATP600 3.4 45.3 1.0
OD2 A:ASP272 4.0 43.2 1.0
HG21 A:THR179 4.0 43.7 1.0
OD1 A:ASP272 4.0 43.2 1.0
N A:THR179 4.0 43.7 1.0
O3G A:ATP600 4.1 45.3 1.0
CA A:THR179 4.2 43.7 1.0
CG2 A:THR179 4.2 43.7 1.0
O2A A:ATP600 4.3 45.3 1.0
O3A A:ATP600 4.3 45.3 1.0
HB2 A:LYS178 4.4 44.0 1.0
O1B A:ATP600 4.4 45.3 1.0
CG A:ASP272 4.4 43.2 1.0
HE2 A:LYS178 4.5 44.0 1.0
O1G A:ATP600 4.5 45.3 1.0
HA A:THR179 4.5 43.7 1.0
PA A:ATP600 4.7 45.3 1.0
HG23 A:THR179 4.8 43.7 1.0
O1A A:ATP600 4.8 45.3 1.0
HG22 A:THR179 4.9 43.7 1.0
HD13 A:ILE329 4.9 42.7 1.0
HZ3 A:LYS178 4.9 44.0 1.0
HG21 A:ILE329 5.0 42.7 1.0

Magnesium binding site 2 out of 5 in 7njs

Go back to Magnesium Binding Sites List in 7njs
Magnesium binding site 2 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Smegmatis Atp Synthase State 3C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:45.6
occ:1.00
OG1 B:THR179 2.2 46.1 1.0
O2G B:ATP600 2.2 49.1 1.0
O B:HOH701 2.2 46.9 1.0
O2B B:ATP600 2.2 49.1 1.0
O B:HOH703 2.2 45.7 1.0
O B:HOH702 2.2 45.1 1.0
HB B:THR179 3.0 46.1 1.0
CB B:THR179 3.1 46.1 1.0
PB B:ATP600 3.4 49.1 1.0
H B:THR179 3.4 46.1 1.0
O3B B:ATP600 3.4 49.1 1.0
PG B:ATP600 3.4 49.1 1.0
OD2 B:ASP272 3.6 43.8 1.0
OD1 B:ASP272 3.9 43.8 1.0
HG21 B:THR179 3.9 46.1 1.0
N B:THR179 4.0 46.1 1.0
OE1 B:GLN211 4.0 44.6 1.0
CG2 B:THR179 4.2 46.1 1.0
CA B:THR179 4.2 46.1 1.0
O3G B:ATP600 4.2 49.1 1.0
CG B:ASP272 4.2 43.8 1.0
O1A B:ATP600 4.3 49.1 1.0
O3A B:ATP600 4.3 49.1 1.0
HB2 B:LYS178 4.4 46.0 1.0
O1B B:ATP600 4.4 49.1 1.0
O1G B:ATP600 4.5 49.1 1.0
HA B:THR179 4.5 46.1 1.0
HE2 B:LYS178 4.6 46.0 1.0
PA B:ATP600 4.7 49.1 1.0
HG23 B:THR179 4.8 46.1 1.0
HG22 B:THR179 4.8 46.1 1.0
HZ3 B:LYS178 4.8 46.0 1.0
O2A B:ATP600 4.9 49.1 1.0
CD B:GLN211 5.0 44.6 1.0

Magnesium binding site 3 out of 5 in 7njs

Go back to Magnesium Binding Sites List in 7njs
Magnesium binding site 3 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mycobacterium Smegmatis Atp Synthase State 3C within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:42.9
occ:1.00
OG1 C:THR179 2.2 42.2 1.0
O2G C:ATP600 2.2 43.9 1.0
O2B C:ATP600 2.2 43.9 1.0
O C:HOH701 2.2 41.5 1.0
O C:HOH703 2.2 44.0 1.0
O C:HOH702 2.2 43.1 1.0
HB C:THR179 2.9 42.2 1.0
CB C:THR179 3.1 42.2 1.0
H C:THR179 3.3 42.2 1.0
PB C:ATP600 3.4 43.9 1.0
O3B C:ATP600 3.4 43.9 1.0
PG C:ATP600 3.4 43.9 1.0
OD2 C:ASP272 3.9 43.4 1.0
HG21 C:THR179 4.0 42.2 1.0
N C:THR179 4.0 42.2 1.0
OD1 C:ASP272 4.0 43.4 1.0
CA C:THR179 4.1 42.2 1.0
CG2 C:THR179 4.2 42.2 1.0
O3G C:ATP600 4.2 43.9 1.0
HB2 C:LYS178 4.3 42.7 1.0
O1A C:ATP600 4.3 43.9 1.0
O3A C:ATP600 4.3 43.9 1.0
CG C:ASP272 4.4 43.4 1.0
O1B C:ATP600 4.4 43.9 1.0
HE2 C:LYS178 4.4 42.7 1.0
O1G C:ATP600 4.5 43.9 1.0
HA C:THR179 4.5 42.2 1.0
PA C:ATP600 4.7 43.9 1.0
HG23 C:THR179 4.7 42.2 1.0
HD13 C:ILE329 4.8 42.3 1.0
O2A C:ATP600 4.8 43.9 1.0
HG22 C:THR179 4.8 42.2 1.0
HG21 C:ILE329 4.9 42.3 1.0
HZ3 C:LYS178 4.9 42.7 1.0
HZ1 C:LYS178 5.0 42.7 1.0

Magnesium binding site 4 out of 5 in 7njs

Go back to Magnesium Binding Sites List in 7njs
Magnesium binding site 4 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mycobacterium Smegmatis Atp Synthase State 3C within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:46.9
occ:1.00
O D:HOH701 2.2 46.5 1.0
O2B D:ADP600 2.2 44.9 1.0
O D:HOH703 2.2 48.1 1.0
OG1 D:THR167 2.2 44.7 1.0
O D:HOH702 2.2 45.4 1.0
O D:HOH704 2.2 46.0 1.0
HH12 D:ARG193 3.2 44.5 1.0
HB D:THR167 3.2 44.7 1.0
CB D:THR167 3.2 44.7 1.0
PB D:ADP600 3.3 44.9 1.0
H D:THR167 3.5 44.7 1.0
O3B D:ADP600 3.6 44.9 1.0
O3A D:ADP600 3.7 44.9 1.0
NH1 D:ARG193 3.7 44.5 1.0
HH11 D:ARG193 3.7 44.5 1.0
OE2 D:GLU196 3.8 45.2 1.0
OE1 D:GLU192 3.8 45.9 1.0
N D:THR167 4.0 44.7 1.0
OE1 D:GLU196 4.0 45.2 1.0
HH11 C:ARG376 4.1 44.4 1.0
HB2 D:LYS166 4.1 43.7 1.0
HG21 D:THR167 4.1 44.7 1.0
HH12 C:ARG376 4.2 44.4 1.0
CA D:THR167 4.2 44.7 1.0
O1A D:ADP600 4.2 44.9 1.0
OD2 D:ASP254 4.2 45.1 1.0
PA D:ADP600 4.3 44.9 1.0
O2A D:ADP600 4.3 44.9 1.0
CG2 D:THR167 4.3 44.7 1.0
CD D:GLU196 4.3 45.2 1.0
NH1 C:ARG376 4.4 44.4 1.0
OD1 D:ASP254 4.4 45.1 1.0
CD D:GLU192 4.4 45.9 1.0
HE2 D:LYS166 4.4 43.7 1.0
HA D:THR167 4.4 44.7 1.0
O1B D:ADP600 4.6 44.9 1.0
OE2 D:GLU192 4.7 45.9 1.0
HD22 D:ASN255 4.8 44.1 1.0
CG D:ASP254 4.8 45.1 1.0
CZ D:ARG193 4.8 44.5 1.0
HZ3 D:LYS166 4.8 43.7 1.0
HG23 D:THR167 4.9 44.7 1.0
HH22 D:ARG193 4.9 44.5 1.0
HZ1 D:LYS166 4.9 43.7 1.0
HG3 D:GLU192 4.9 45.9 1.0
CB D:LYS166 5.0 43.7 1.0
HG22 D:THR167 5.0 44.7 1.0

Magnesium binding site 5 out of 5 in 7njs

Go back to Magnesium Binding Sites List in 7njs
Magnesium binding site 5 out of 5 in the Mycobacterium Smegmatis Atp Synthase State 3C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Mycobacterium Smegmatis Atp Synthase State 3C within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:41.7
occ:1.00
OG1 F:THR167 2.2 43.0 1.0
O F:HOH701 2.2 45.4 1.0
O2G F:ATP600 2.2 44.2 1.0
O2B F:ATP600 2.2 44.2 1.0
O F:HOH702 2.2 43.1 1.0
O F:HOH703 2.2 42.8 1.0
HB F:THR167 3.0 43.0 1.0
HH12 F:ARG193 3.1 43.2 1.0
CB F:THR167 3.1 43.0 1.0
PB F:ATP600 3.4 44.2 1.0
PG F:ATP600 3.4 44.2 1.0
O3B F:ATP600 3.4 44.2 1.0
H F:THR167 3.4 43.0 1.0
OE1 F:GLU192 3.7 44.2 1.0
NH1 F:ARG193 3.7 43.2 1.0
OE2 F:GLU196 3.8 44.4 1.0
HH11 F:ARG193 3.8 43.2 1.0
N F:THR167 4.0 43.0 1.0
HB2 F:LYS166 4.0 41.9 1.0
HH12 B:ARG376 4.0 46.2 1.0
HG21 F:THR167 4.0 43.0 1.0
HE2 F:LYS166 4.1 41.9 1.0
OD2 F:ASP254 4.1 43.6 1.0
O2A F:ATP600 4.1 44.2 1.0
OE1 F:GLU196 4.1 44.4 1.0
CA F:THR167 4.1 43.0 1.0
CG2 F:THR167 4.2 43.0 1.0
O3A F:ATP600 4.3 44.2 1.0
O3G F:ATP600 4.4 44.2 1.0
CD F:GLU196 4.4 44.4 1.0
O1G F:ATP600 4.4 44.2 1.0
HA F:THR167 4.4 43.0 1.0
O1B F:ATP600 4.4 44.2 1.0
CD F:GLU192 4.5 44.2 1.0
OD1 F:ASP254 4.6 43.6 1.0
PA F:ATP600 4.7 44.2 1.0
NH1 B:ARG376 4.7 46.2 1.0
HH22 F:ARG193 4.8 43.2 1.0
CG F:ASP254 4.8 43.6 1.0
HH11 B:ARG376 4.8 46.2 1.0
HG23 F:THR167 4.8 43.0 1.0
HG3 F:GLU192 4.8 44.2 1.0
HG22 F:THR167 4.8 43.0 1.0
CZ F:ARG193 4.9 43.2 1.0
O1A F:ATP600 4.9 44.2 1.0
HZ1 F:LYS166 4.9 41.9 1.0
CB F:LYS166 4.9 41.9 1.0
HZ3 F:LYS166 5.0 41.9 1.0
CE F:LYS166 5.0 41.9 1.0

Reference:

J.Petri, M.G.Montgomery, T.J.Spikes, G.M.Cook, J.E.Walker. Structure of the Atp Synthase From Mycobacterium Smegmatis To Be Published.
Page generated: Thu Oct 3 02:08:14 2024

Last articles

Na in 6DQ1
Na in 6DW4
Na in 6DV0
Na in 6DV4
Na in 6DQ0
Na in 6DMC
Na in 6DMD
Na in 6DJQ
Na in 6DLT
Na in 6DLQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy