Atomistry » Magnesium » PDB 7ni7-7nrw » 7nk7
Atomistry »
  Magnesium »
    PDB 7ni7-7nrw »
      7nk7 »

Magnesium in PDB 7nk7: Mycobacterium Smegmatis Atp Synthase F1 State 1

Enzymatic activity of Mycobacterium Smegmatis Atp Synthase F1 State 1

All present enzymatic activity of Mycobacterium Smegmatis Atp Synthase F1 State 1:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Smegmatis Atp Synthase F1 State 1 (pdb code 7nk7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Mycobacterium Smegmatis Atp Synthase F1 State 1, PDB code: 7nk7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7nk7

Go back to Magnesium Binding Sites List in 7nk7
Magnesium binding site 1 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Smegmatis Atp Synthase F1 State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:28.0
occ:1.00
O2G A:ATP600 2.2 33.3 1.0
OG1 A:THR179 2.2 29.7 1.0
O2B A:ATP600 2.2 33.3 1.0
O A:HOH721 2.2 28.1 1.0
O A:HOH790 2.2 29.7 1.0
O A:HOH723 2.2 28.8 1.0
HB A:THR179 3.0 29.7 1.0
CB A:THR179 3.1 29.7 1.0
H A:THR179 3.3 29.7 1.0
PG A:ATP600 3.3 33.3 1.0
PB A:ATP600 3.3 33.3 1.0
O3B A:ATP600 3.4 33.3 1.0
OD2 A:ASP272 3.8 28.2 1.0
N A:THR179 4.0 29.7 1.0
O3G A:ATP600 4.0 33.3 1.0
HG21 A:THR179 4.0 29.7 1.0
OD1 A:ASP272 4.0 28.2 1.0
O A:HOH772 4.1 31.0 1.0
CA A:THR179 4.1 29.7 1.0
O A:HOH760 4.1 30.1 1.0
CG2 A:THR179 4.2 29.7 1.0
O1A A:ATP600 4.2 33.3 1.0
O3A A:ATP600 4.2 33.3 1.0
HB2 A:LYS178 4.3 29.3 1.0
CG A:ASP272 4.4 28.2 1.0
O1B A:ATP600 4.4 33.3 1.0
O A:HOH796 4.4 28.9 1.0
HA A:THR179 4.4 29.7 1.0
O A:HOH795 4.5 32.4 1.0
O1G A:ATP600 4.5 33.3 1.0
HE2 A:LYS178 4.5 29.3 1.0
PA A:ATP600 4.6 33.3 1.0
O2A A:ATP600 4.7 33.3 1.0
O A:HOH737 4.7 30.2 1.0
HG23 A:THR179 4.8 29.7 1.0
HG22 A:THR179 4.8 29.7 1.0
HZ3 A:LYS178 4.8 29.3 1.0
HZ1 A:LYS178 4.9 29.3 1.0

Magnesium binding site 2 out of 5 in 7nk7

Go back to Magnesium Binding Sites List in 7nk7
Magnesium binding site 2 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Smegmatis Atp Synthase F1 State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:31.4
occ:1.00
OG1 B:THR179 2.2 32.5 1.0
O2G B:ATP600 2.2 36.0 1.0
O2B B:ATP600 2.2 36.0 1.0
O B:HOH702 2.2 31.5 1.0
O B:HOH758 2.2 30.5 1.0
O B:HOH722 2.2 31.7 1.0
HB B:THR179 3.1 32.5 1.0
CB B:THR179 3.2 32.5 1.0
O3B B:ATP600 3.3 36.0 1.0
PB B:ATP600 3.3 36.0 1.0
PG B:ATP600 3.3 36.0 1.0
H B:THR179 3.3 32.5 1.0
OD2 B:ASP272 3.9 29.2 1.0
O B:HOH712 3.9 32.8 1.0
N B:THR179 4.0 32.5 1.0
OD1 B:ASP272 4.0 29.2 1.0
HG21 B:THR179 4.0 32.5 1.0
O3G B:ATP600 4.1 36.0 1.0
OE1 B:GLN211 4.2 29.9 1.0
CA B:THR179 4.2 32.5 1.0
O B:HOH733 4.2 37.3 1.0
CG2 B:THR179 4.2 32.5 1.0
O3A B:ATP600 4.3 36.0 1.0
O1A B:ATP600 4.3 36.0 1.0
O1B B:ATP600 4.3 36.0 1.0
HB2 B:LYS178 4.4 33.0 1.0
CG B:ASP272 4.4 29.2 1.0
O1G B:ATP600 4.5 36.0 1.0
HA B:THR179 4.5 32.5 1.0
HE2 B:LYS178 4.6 33.0 1.0
PA B:ATP600 4.7 36.0 1.0
HG23 B:THR179 4.8 32.5 1.0
HG22 B:THR179 4.9 32.5 1.0
HZ3 B:LYS178 4.9 33.0 1.0
HZ1 B:LYS178 4.9 33.0 1.0
O2A B:ATP600 4.9 36.0 1.0
CD B:GLN211 5.0 29.9 1.0

Magnesium binding site 3 out of 5 in 7nk7

Go back to Magnesium Binding Sites List in 7nk7
Magnesium binding site 3 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mycobacterium Smegmatis Atp Synthase F1 State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:29.2
occ:1.00
O2B C:ATP600 2.2 29.7 1.0
O2G C:ATP600 2.2 29.7 1.0
O C:HOH777 2.2 29.3 1.0
O C:HOH747 2.2 26.4 1.0
O C:HOH727 2.2 26.7 1.0
OG1 C:THR179 2.2 30.2 1.0
HB C:THR179 3.0 30.2 1.0
CB C:THR179 3.1 30.2 1.0
PB C:ATP600 3.3 29.7 1.0
O3B C:ATP600 3.3 29.7 1.0
PG C:ATP600 3.3 29.7 1.0
H C:THR179 3.3 30.2 1.0
OD2 C:ASP272 3.9 29.1 1.0
N C:THR179 4.0 30.2 1.0
HG21 C:THR179 4.0 30.2 1.0
OD1 C:ASP272 4.0 29.1 1.0
O3G C:ATP600 4.1 29.7 1.0
CA C:THR179 4.1 30.2 1.0
O C:HOH729 4.1 29.4 1.0
CG2 C:THR179 4.2 30.2 1.0
O1B C:ATP600 4.3 29.7 1.0
O3A C:ATP600 4.3 29.7 1.0
HB2 C:LYS178 4.3 30.9 1.0
O1A C:ATP600 4.3 29.7 1.0
CG C:ASP272 4.4 29.1 1.0
O1G C:ATP600 4.5 29.7 1.0
HA C:THR179 4.5 30.2 1.0
HE2 C:LYS178 4.5 30.9 1.0
PA C:ATP600 4.7 29.7 1.0
HG23 C:THR179 4.8 30.2 1.0
HG22 C:THR179 4.8 30.2 1.0
O2A C:ATP600 4.9 29.7 1.0
HD13 C:ILE329 4.9 29.1 1.0

Magnesium binding site 4 out of 5 in 7nk7

Go back to Magnesium Binding Sites List in 7nk7
Magnesium binding site 4 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mycobacterium Smegmatis Atp Synthase F1 State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:33.7
occ:1.00
OG1 D:THR167 2.2 32.7 1.0
O D:HOH756 2.2 30.5 1.0
O D:HOH703 2.2 31.9 1.0
O D:HOH710 2.2 32.8 1.0
O2B D:ADP600 2.2 34.5 1.0
O D:HOH706 2.2 32.1 1.0
HB D:THR167 3.0 32.7 1.0
CB D:THR167 3.1 32.7 1.0
PB D:ADP600 3.3 34.5 1.0
HH12 D:ARG193 3.3 31.2 1.0
O3B D:ADP600 3.4 34.5 1.0
H D:THR167 3.5 32.7 1.0
HH11 D:ARG193 3.7 31.2 1.0
NH1 D:ARG193 3.8 31.2 1.0
OE2 D:GLU196 4.0 32.2 1.0
HG21 D:THR167 4.0 32.7 1.0
HH11 C:ARG376 4.0 32.2 1.0
HH12 C:ARG376 4.0 32.2 1.0
N D:THR167 4.0 32.7 1.0
O2A D:ADP600 4.0 34.5 1.0
OE1 D:GLU196 4.1 32.2 1.0
OD2 D:ASP254 4.1 30.5 1.0
CA D:THR167 4.1 32.7 1.0
HB2 D:LYS166 4.1 31.3 1.0
CG2 D:THR167 4.2 32.7 1.0
O3A D:ADP600 4.2 34.5 1.0
O D:HOH772 4.2 30.9 1.0
OE1 D:GLU192 4.3 31.1 1.0
NH1 C:ARG376 4.3 32.2 1.0
HE2 D:LYS166 4.3 31.3 1.0
HA D:THR167 4.4 32.7 1.0
CD D:GLU196 4.4 32.2 1.0
PA D:ADP600 4.4 34.5 1.0
OD1 D:ASP254 4.4 30.5 1.0
O1A D:ADP600 4.4 34.5 1.0
O1B D:ADP600 4.5 34.5 1.0
HG3 D:GLU192 4.6 31.1 1.0
CG D:ASP254 4.7 30.5 1.0
O D:HOH776 4.7 30.3 1.0
HG23 D:THR167 4.8 32.7 1.0
HG22 D:THR167 4.8 32.7 1.0
HZ1 D:LYS166 4.9 31.3 1.0
HZ3 D:LYS166 4.9 31.3 1.0
CD D:GLU192 4.9 31.1 1.0
HD22 D:ASN255 4.9 29.9 1.0

Magnesium binding site 5 out of 5 in 7nk7

Go back to Magnesium Binding Sites List in 7nk7
Magnesium binding site 5 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Mycobacterium Smegmatis Atp Synthase F1 State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:30.2
occ:1.00
OG1 F:THR167 2.2 30.8 1.0
O2G F:ATP600 2.2 34.5 1.0
O2B F:ATP600 2.2 34.5 1.0
O F:HOH702 2.2 30.7 1.0
O F:HOH704 2.2 30.7 1.0
O F:HOH752 2.2 28.2 1.0
HB F:THR167 3.0 30.8 1.0
CB F:THR167 3.1 30.8 1.0
HH12 F:ARG193 3.1 30.7 1.0
PB F:ATP600 3.4 34.5 1.0
H F:THR167 3.4 30.8 1.0
PG F:ATP600 3.4 34.5 1.0
O3B F:ATP600 3.4 34.5 1.0
OE2 F:GLU196 3.7 31.6 1.0
NH1 F:ARG193 3.8 30.7 1.0
HH11 F:ARG193 3.8 30.7 1.0
HH12 B:ARG376 3.9 34.1 1.0
OE1 F:GLU192 3.9 29.5 1.0
N F:THR167 4.0 30.8 1.0
O F:HOH753 4.0 30.3 1.0
OD2 F:ASP254 4.0 29.0 1.0
HG21 F:THR167 4.0 30.8 1.0
HB2 F:LYS166 4.0 29.9 1.0
O2A F:ATP600 4.1 34.5 1.0
OE1 F:GLU196 4.1 31.6 1.0
CA F:THR167 4.1 30.8 1.0
HE2 F:LYS166 4.1 29.9 1.0
CG2 F:THR167 4.2 30.8 1.0
O3A F:ATP600 4.2 34.5 1.0
CD F:GLU196 4.3 31.6 1.0
O3G F:ATP600 4.3 34.5 1.0
O1G F:ATP600 4.3 34.5 1.0
HA F:THR167 4.4 30.8 1.0
O1B F:ATP600 4.5 34.5 1.0
OD1 F:ASP254 4.5 29.0 1.0
HZ1 F:LYS166 4.6 29.9 1.0
PA F:ATP600 4.6 34.5 1.0
NH1 B:ARG376 4.6 34.1 1.0
HZ3 F:LYS166 4.6 29.9 1.0
HH11 B:ARG376 4.7 34.1 1.0
CD F:GLU192 4.7 29.5 1.0
HG3 F:GLU192 4.7 29.5 1.0
CG F:ASP254 4.7 29.0 1.0
HG23 F:THR167 4.8 30.8 1.0
O1A F:ATP600 4.8 34.5 1.0
HG22 F:THR167 4.8 30.8 1.0
NZ F:LYS166 4.9 29.9 1.0
CE F:LYS166 4.9 29.9 1.0
CB F:LYS166 5.0 29.9 1.0
HH22 F:ARG193 5.0 30.7 1.0
CZ F:ARG193 5.0 30.7 1.0

Reference:

J.Petri, M.G.Montgomery, T.J.Spikes, J.E.Walker. Structure of the Atp Synthase From Mycobacterium Smegmatis To Be Published.
Page generated: Thu Oct 3 02:08:23 2024

Last articles

Na in 6BQ9
Na in 6BWI
Na in 6C02
Na in 6C01
Na in 6BG4
Na in 6C0L
Na in 6BXR
Na in 6BZX
Na in 6BZ2
Na in 6BX5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy