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Magnesium in PDB 7nkh: Mycobacterium Smegmatis Atp Synthase F1 State 2

Enzymatic activity of Mycobacterium Smegmatis Atp Synthase F1 State 2

All present enzymatic activity of Mycobacterium Smegmatis Atp Synthase F1 State 2:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Smegmatis Atp Synthase F1 State 2 (pdb code 7nkh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Mycobacterium Smegmatis Atp Synthase F1 State 2, PDB code: 7nkh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7nkh

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Magnesium binding site 1 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Smegmatis Atp Synthase F1 State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:50.7
occ:1.00
O2G A:ATP600 2.2 54.2 1.0
O A:HOH703 2.2 51.4 1.0
OG1 A:THR179 2.2 50.7 1.0
O A:HOH701 2.2 53.2 1.0
O2B A:ATP600 2.2 54.2 1.0
O A:HOH702 2.2 53.7 1.0
HB A:THR179 3.0 50.7 1.0
CB A:THR179 3.2 50.7 1.0
O3B A:ATP600 3.2 54.2 1.0
PG A:ATP600 3.2 54.2 1.0
PB A:ATP600 3.3 54.2 1.0
H A:THR179 3.3 50.7 1.0
O3G A:ATP600 3.7 54.2 1.0
OD2 A:ASP272 3.8 50.6 1.0
N A:THR179 4.0 50.7 1.0
HG21 A:THR179 4.0 50.7 1.0
OD1 A:ASP272 4.0 50.6 1.0
CA A:THR179 4.2 50.7 1.0
O3A A:ATP600 4.2 54.2 1.0
CG2 A:THR179 4.2 50.7 1.0
O2A A:ATP600 4.3 54.2 1.0
HB2 A:LYS178 4.3 51.3 1.0
O1B A:ATP600 4.4 54.2 1.0
CG A:ASP272 4.4 50.6 1.0
HA A:THR179 4.5 50.7 1.0
HE2 A:LYS178 4.5 51.3 1.0
O1G A:ATP600 4.5 54.2 1.0
PA A:ATP600 4.7 54.2 1.0
HZ3 A:LYS178 4.7 51.3 1.0
HG23 A:THR179 4.8 50.7 1.0
HD13 A:ILE329 4.8 49.6 1.0
HZ1 A:LYS178 4.8 51.3 1.0
O1A A:ATP600 4.9 54.2 1.0
HG22 A:THR179 4.9 50.7 1.0
HG21 A:ILE329 4.9 49.6 1.0

Magnesium binding site 2 out of 5 in 7nkh

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Magnesium binding site 2 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Smegmatis Atp Synthase F1 State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:55.1
occ:1.00
OG1 B:THR179 2.2 52.0 1.0
O B:HOH701 2.2 54.3 1.0
O B:HOH702 2.2 55.2 1.0
O2G B:ATP600 2.2 58.3 1.0
O2B B:ATP600 2.2 58.3 1.0
O B:HOH703 2.2 51.2 1.0
HB B:THR179 2.8 52.0 1.0
CB B:THR179 3.0 52.0 1.0
PB B:ATP600 3.4 58.3 1.0
O3B B:ATP600 3.4 58.3 1.0
PG B:ATP600 3.4 58.3 1.0
H B:THR179 3.4 52.0 1.0
OD2 B:ASP272 3.8 50.0 1.0
HG21 B:THR179 3.8 52.0 1.0
OD1 B:ASP272 3.9 50.0 1.0
OE1 B:GLN211 4.0 51.3 1.0
CG2 B:THR179 4.0 52.0 1.0
N B:THR179 4.1 52.0 1.0
CA B:THR179 4.1 52.0 1.0
CG B:ASP272 4.3 50.0 1.0
O3G B:ATP600 4.3 58.3 1.0
O3A B:ATP600 4.4 58.3 1.0
O1A B:ATP600 4.4 58.3 1.0
O1B B:ATP600 4.4 58.3 1.0
HB2 B:LYS178 4.4 53.0 1.0
O1G B:ATP600 4.5 58.3 1.0
HA B:THR179 4.5 52.0 1.0
HE2 B:LYS178 4.5 53.0 1.0
HG22 B:THR179 4.6 52.0 1.0
HG23 B:THR179 4.7 52.0 1.0
PA B:ATP600 4.8 58.3 1.0
HH B:TYR206 4.9 47.5 1.0
O2A B:ATP600 5.0 58.3 1.0

Magnesium binding site 3 out of 5 in 7nkh

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Magnesium binding site 3 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mycobacterium Smegmatis Atp Synthase F1 State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:53.6
occ:1.00
OG1 C:THR179 2.2 50.1 1.0
O2G C:ATP600 2.2 52.1 1.0
O2B C:ATP600 2.2 52.1 1.0
O C:HOH703 2.2 50.6 1.0
O C:HOH702 2.2 48.3 1.0
O C:HOH701 2.2 51.2 1.0
HB C:THR179 2.9 50.1 1.0
CB C:THR179 3.1 50.1 1.0
PB C:ATP600 3.4 52.1 1.0
H C:THR179 3.4 50.1 1.0
O3B C:ATP600 3.4 52.1 1.0
PG C:ATP600 3.4 52.1 1.0
OD2 C:ASP272 3.8 48.5 1.0
HG21 C:THR179 3.9 50.1 1.0
N C:THR179 4.0 50.1 1.0
OD1 C:ASP272 4.1 48.5 1.0
CG2 C:THR179 4.1 50.1 1.0
O1A C:ATP600 4.1 52.1 1.0
CA C:THR179 4.1 50.1 1.0
O3G C:ATP600 4.3 52.1 1.0
O3A C:ATP600 4.3 52.1 1.0
CG C:ASP272 4.4 48.5 1.0
HB2 C:LYS178 4.4 49.8 1.0
HE2 C:LYS178 4.4 49.8 1.0
O1B C:ATP600 4.4 52.1 1.0
O1G C:ATP600 4.5 52.1 1.0
HA C:THR179 4.5 50.1 1.0
PA C:ATP600 4.6 52.1 1.0
HG22 C:THR179 4.7 50.1 1.0
HG23 C:THR179 4.7 50.1 1.0
HG21 C:ILE329 4.9 48.3 1.0
O2A C:ATP600 4.9 52.1 1.0

Magnesium binding site 4 out of 5 in 7nkh

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Magnesium binding site 4 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mycobacterium Smegmatis Atp Synthase F1 State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:51.4
occ:1.00
O D:HOH701 2.2 54.1 1.0
O2B D:ADP600 2.2 53.9 1.0
O D:HOH702 2.2 54.4 1.0
O D:HOH704 2.2 55.3 1.0
O D:HOH703 2.2 54.3 1.0
OG1 D:THR167 2.2 53.0 1.0
HB D:THR167 3.1 53.0 1.0
HH12 D:ARG193 3.1 52.8 1.0
CB D:THR167 3.2 53.0 1.0
PB D:ADP600 3.3 53.9 1.0
H D:THR167 3.5 53.0 1.0
O3B D:ADP600 3.6 53.9 1.0
O3A D:ADP600 3.6 53.9 1.0
OE2 D:GLU196 3.7 54.9 1.0
NH1 D:ARG193 3.7 52.8 1.0
HH12 C:ARG376 3.8 52.4 1.0
HH11 D:ARG193 3.8 52.8 1.0
HH11 C:ARG376 3.8 52.4 1.0
OE1 D:GLU196 3.9 54.9 1.0
N D:THR167 4.0 53.0 1.0
OE1 D:GLU192 4.1 54.8 1.0
HG21 D:THR167 4.1 53.0 1.0
NH1 C:ARG376 4.1 52.4 1.0
HB2 D:LYS166 4.1 51.3 1.0
CA D:THR167 4.2 53.0 1.0
O2A D:ADP600 4.2 53.9 1.0
OD2 D:ASP254 4.2 52.2 1.0
CD D:GLU196 4.2 54.9 1.0
CG2 D:THR167 4.3 53.0 1.0
PA D:ADP600 4.3 53.9 1.0
HA D:THR167 4.4 53.0 1.0
CD D:GLU192 4.4 54.8 1.0
HE2 D:LYS166 4.4 51.3 1.0
OD1 D:ASP254 4.5 52.2 1.0
O1A D:ADP600 4.5 53.9 1.0
O1B D:ADP600 4.6 53.9 1.0
OE2 D:GLU192 4.6 54.8 1.0
HH22 D:ARG193 4.7 52.8 1.0
CZ D:ARG193 4.8 52.8 1.0
HG3 D:GLU192 4.8 54.8 1.0
CG D:ASP254 4.8 52.2 1.0
HG23 D:THR167 4.8 53.0 1.0
HG22 D:THR167 4.9 53.0 1.0

Magnesium binding site 5 out of 5 in 7nkh

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Magnesium binding site 5 out of 5 in the Mycobacterium Smegmatis Atp Synthase F1 State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Mycobacterium Smegmatis Atp Synthase F1 State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:47.1
occ:1.00
O2G F:ATP600 2.2 52.5 1.0
OG1 F:THR167 2.2 49.4 1.0
O F:HOH701 2.2 50.1 1.0
O2B F:ATP600 2.2 52.5 1.0
O F:HOH703 2.2 47.1 1.0
O F:HOH702 2.2 51.2 1.0
HB F:THR167 3.0 49.4 1.0
HH12 F:ARG193 3.1 49.6 1.0
CB F:THR167 3.2 49.4 1.0
OE1 F:GLU192 3.3 49.7 1.0
H F:THR167 3.4 49.4 1.0
PB F:ATP600 3.4 52.5 1.0
O3B F:ATP600 3.4 52.5 1.0
PG F:ATP600 3.4 52.5 1.0
HH11 F:ARG193 3.6 49.6 1.0
OE2 F:GLU196 3.6 51.6 1.0
NH1 F:ARG193 3.7 49.6 1.0
HH12 B:ARG376 3.8 52.7 1.0
OE1 F:GLU196 3.9 51.6 1.0
O2A F:ATP600 3.9 52.5 1.0
N F:THR167 3.9 49.4 1.0
HB2 F:LYS166 4.0 48.3 1.0
HG21 F:THR167 4.1 49.4 1.0
CA F:THR167 4.1 49.4 1.0
CD F:GLU196 4.2 51.6 1.0
CG2 F:THR167 4.2 49.4 1.0
O3A F:ATP600 4.2 52.5 1.0
HE2 F:LYS166 4.3 48.3 1.0
O3G F:ATP600 4.4 52.5 1.0
O1G F:ATP600 4.4 52.5 1.0
HA F:THR167 4.4 49.4 1.0
HH11 B:ARG376 4.4 52.7 1.0
NH1 B:ARG376 4.5 52.7 1.0
CD F:GLU192 4.5 49.7 1.0
O1B F:ATP600 4.5 52.5 1.0
PA F:ATP600 4.6 52.5 1.0
OD2 F:ASP254 4.6 49.2 1.0
OD1 F:ASP254 4.7 49.2 1.0
HG23 F:THR167 4.8 49.4 1.0
O1A F:ATP600 4.8 52.5 1.0
HZ3 F:LYS166 4.8 48.3 1.0
HZ1 F:LYS166 4.9 48.3 1.0
HG22 F:THR167 4.9 49.4 1.0
CB F:LYS166 4.9 48.3 1.0
CZ F:ARG193 4.9 49.6 1.0
HB3 F:LYS166 5.0 48.3 1.0

Reference:

J.Petri, M.G.Montgomery, T.J.Spikes, G.M.Cook, J.E.Walker. Structure of the Atp Synthase From Mycobacterium Smegmatis To Be Published.
Page generated: Thu Oct 3 02:08:28 2024

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