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Magnesium in PDB 7nmx: Crystal Structure of 14-3-3 Sigma in Complex with 13MER Amot-P130 Peptide and Fragment 12

Protein crystallography data

The structure of Crystal Structure of 14-3-3 Sigma in Complex with 13MER Amot-P130 Peptide and Fragment 12, PDB code: 7nmx was solved by F.Centorrino, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.89 / 2.30
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.469, 111.993, 62.699, 90, 90, 90
R / Rfree (%) 17.1 / 22.7

Other elements in 7nmx:

The structure of Crystal Structure of 14-3-3 Sigma in Complex with 13MER Amot-P130 Peptide and Fragment 12 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of 14-3-3 Sigma in Complex with 13MER Amot-P130 Peptide and Fragment 12 (pdb code 7nmx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of 14-3-3 Sigma in Complex with 13MER Amot-P130 Peptide and Fragment 12, PDB code: 7nmx:

Magnesium binding site 1 out of 1 in 7nmx

Go back to Magnesium Binding Sites List in 7nmx
Magnesium binding site 1 out of 1 in the Crystal Structure of 14-3-3 Sigma in Complex with 13MER Amot-P130 Peptide and Fragment 12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 14-3-3 Sigma in Complex with 13MER Amot-P130 Peptide and Fragment 12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:3.1
occ:0.50
O A:HOH465 2.2 16.9 1.0
OE1 A:GLU2 2.3 17.0 1.0
O A:HOH442 2.5 8.8 1.0
CD A:GLU2 3.3 8.8 1.0
OE2 A:GLU2 3.7 11.0 1.0
HA A:GLU2 3.9 10.5 1.0
H A:ARG3 4.0 7.3 1.0
O A:HOH526 4.3 7.7 1.0
HB3 A:GLU2 4.5 10.5 1.0
CG A:GLU2 4.6 8.7 1.0
O A:HOH607 4.6 6.7 1.0
CA A:GLU2 4.7 8.7 1.0
CB A:GLU2 4.8 8.7 1.0
N A:ARG3 4.9 6.1 1.0
HG2 A:GLU2 4.9 10.4 1.0

Reference:

F.Centorrino, B.Andlovic, P.Cossar, L.Brunsveld, C.Ottmann. Fragment-Based Exploration of the 14-3-3/Amot-P130 Interface. Curr Res Struct Biol V. 4 21 2022.
ISSN: ESSN 2665-928X
PubMed: 35036934
DOI: 10.1016/J.CRSTBI.2021.12.003
Page generated: Thu Oct 3 02:10:21 2024

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