Magnesium in PDB 7nz0: Cryo-Em Structure of the Mukbef-Matp-Dna Monomer (Open Conformation)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Mukbef-Matp-Dna Monomer (Open Conformation) (pdb code 7nz0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Mukbef-Matp-Dna Monomer (Open Conformation), PDB code: 7nz0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Mukbef-Matp-Dna Monomer (Open Conformation)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Mukbef-Matp-Dna Monomer (Open Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2011 b:445.1 occ:1.00 O2B A:ATP2101 1.8 414.0 1.0 O2G A:ATP2101 1.9 414.0 1.0 H A:SER41 2.0 441.6 1.0 O2A A:ATP2101 2.2 414.0 1.0 PB A:ATP2101 2.2 414.0 1.0 O3A A:ATP2101 2.2 414.0 1.0 PA A:ATP2101 2.2 414.0 1.0 O1A A:ATP2101 2.4 414.0 1.0 O3B A:ATP2101 2.5 414.0 1.0 OG A:SER41 2.5 441.6 1.0 PG A:ATP2101 2.8 414.0 1.0 HB3 A:SER41 2.8 441.6 1.0 N A:SER41 2.8 441.6 1.0 HG A:SER41 2.9 441.6 1.0 H A:LYS40 2.9 434.6 1.0 CB A:SER41 3.0 441.6 1.0 N A:LYS40 3.3 434.6 1.0 H A:GLY39 3.4 435.7 1.0 CA A:SER41 3.5 441.6 1.0 HA2 A:GLY39 3.6 435.7 1.0 HG B:SER1366 3.6 439.2 1.0 H A:THR42 3.6 427.6 1.0 O1B A:ATP2101 3.7 414.0 1.0 HB2 A:LYS40 3.7 434.6 1.0 O1G A:ATP2101 3.8 414.0 1.0 O5' A:ATP2101 3.8 414.0 1.0 C A:GLY39 3.8 435.7 1.0 O3G A:ATP2101 3.8 414.0 1.0 C A:LYS40 3.8 434.6 1.0 CA A:LYS40 3.9 434.6 1.0 HB2 A:SER41 4.0 441.6 1.0 CA A:GLY39 4.0 435.7 1.0 HG3 A:LYS40 4.0 434.6 1.0 N A:GLY39 4.0 435.7 1.0 HZ3 A:LYS40 4.1 434.6 1.0 HE2 A:LYS40 4.1 434.6 1.0 HB2 B:SER1366 4.2 439.2 1.0 CB A:LYS40 4.2 434.6 1.0 HA A:SER41 4.2 441.6 1.0 N A:THR42 4.2 427.6 1.0 H5'2 A:ATP2101 4.4 414.0 1.0 H A:GLY37 4.4 426.9 1.0 OG B:SER1366 4.4 439.2 1.0 C A:SER41 4.4 441.6 1.0 HZ1 A:LYS40 4.5 434.6 1.0 C5' A:ATP2101 4.6 414.0 1.0 CG A:LYS40 4.6 434.6 1.0 HA B:SER1366 4.6 439.2 1.0 NZ A:LYS40 4.6 434.6 1.0 O A:GLY39 4.6 435.7 1.0 HA2 A:GLY37 4.6 426.9 1.0 CB B:SER1366 4.7 439.2 1.0 H5'1 A:ATP2101 4.8 414.0 1.0 H B:THR1367 4.8 440.9 1.0 CE A:LYS40 4.8 434.6 1.0 HA A:LYS40 4.9 434.6 1.0 HA3 A:GLY39 4.9 435.7 1.0 O A:LYS40 5.0 434.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Mukbef-Matp-Dna Monomer (Open Conformation)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Mukbef-Matp-Dna Monomer (Open Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2011 b:457.1 occ:1.00 O1A B:ATP2101 1.8 425.7 1.0 O2B B:ATP2101 1.9 425.7 1.0 O3B B:ATP2101 2.0 425.7 1.0 O2G B:ATP2101 2.0 425.7 1.0 PB B:ATP2101 2.1 425.7 1.0 OG B:SER41 2.2 427.6 1.0 O3A B:ATP2101 2.3 425.7 1.0 PA B:ATP2101 2.5 425.7 1.0 HB2 A:SER1366 2.5 444.0 1.0 PG B:ATP2101 2.6 425.7 1.0 H B:SER41 2.8 427.6 1.0 HG B:SER41 2.8 427.6 1.0 HB2 B:SER41 2.9 427.6 1.0 CB B:SER41 3.1 427.6 1.0 HB3 A:SER1366 3.3 444.0 1.0 CB A:SER1366 3.3 444.0 1.0 O2A B:ATP2101 3.4 425.7 1.0 O3G B:ATP2101 3.4 425.7 1.0 H A:THR1367 3.5 453.2 1.0 O1B B:ATP2101 3.6 425.7 1.0 N B:SER41 3.6 427.6 1.0 HA A:SER1366 3.6 444.0 1.0 H B:GLY37 3.7 437.0 1.0 O1G B:ATP2101 3.8 425.7 1.0 O5' B:ATP2101 3.8 425.7 1.0 HA2 B:GLY37 3.8 437.0 1.0 HB3 B:SER41 3.8 427.6 1.0 CA B:SER41 4.0 427.6 1.0 CA A:SER1366 4.0 444.0 1.0 H B:GLY39 4.1 428.4 1.0 H B:LYS40 4.2 430.8 1.0 HB2 B:LYS40 4.3 430.8 1.0 HE2 B:LYS40 4.3 430.8 1.0 N A:THR1367 4.3 453.2 1.0 HG1 A:THR1367 4.4 453.2 1.0 N B:GLY37 4.4 437.0 1.0 OG A:SER1366 4.4 444.0 1.0 HZ3 B:LYS40 4.5 430.8 1.0 CA B:GLY37 4.5 437.0 1.0 N B:LYS40 4.6 430.8 1.0 H B:THR42 4.6 425.9 1.0 HA B:SER41 4.6 427.6 1.0 HZ1 B:LYS40 4.6 430.8 1.0 HE22 B:GLN1407 4.6 477.3 1.0 C A:SER1366 4.7 444.0 1.0 C B:LYS40 4.8 430.8 1.0 HA2 B:GLY39 4.8 428.4 1.0 H5'2 B:ATP2101 4.8 425.7 1.0 HB A:THR1367 4.8 453.2 1.0 N B:GLY39 4.9 428.4 1.0 NZ B:LYS40 4.9 430.8 1.0 HE21 B:GLN1407 4.9 477.3 1.0 H B:ALA38 4.9 432.1 1.0 C5' B:ATP2101 4.9 425.7 1.0 HG3 B:LYS40 5.0 430.8 1.0

F.Buermann, L.F.H.Funke, J.W.Chin, J.Lowe. Dna Entrapment Revealed By the Structure of Bacterial Condensin Mukbef Biorxiv 2021.
DOI: 10.1101/2021.06.29.450292