Atomistry » Magnesium » PDB 7o0q-7o66 » 7o4j
Atomistry »
  Magnesium »
    PDB 7o0q-7o66 »
      7o4j »

Magnesium in PDB 7o4j: Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus)

Enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus)

All present enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus):
2.7.7.6; 3.6.4.12;

Other elements in 7o4j:

The structure of Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus) also contains other interesting chemical elements:

Zinc (Zn) 17 atoms
Iron (Fe) 4 atoms
Fluorine (F) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus) (pdb code 7o4j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus), PDB code: 7o4j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7o4j

Go back to Magnesium Binding Sites List in 7o4j
Magnesium binding site 1 out of 2 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Mg902

b:66.4
occ:1.00
F1 7:BEF901 2.0 88.5 1.0
O1B 7:ADP903 2.0 89.2 1.0
PB 7:ADP903 3.2 89.2 1.0
BE 7:BEF901 3.2 88.5 1.0
O3B 7:ADP903 3.4 89.2 1.0
O1A 7:ADP903 3.8 89.2 1.0
OD1 7:ASP488 4.1 86.1 1.0
O3A 7:ADP903 4.1 89.2 1.0
OD2 7:ASP488 4.1 86.1 1.0
OE2 7:GLU489 4.2 86.6 1.0
OG1 7:THR393 4.2 88.1 1.0
F3 7:BEF901 4.3 88.5 1.0
PA 7:ADP903 4.3 89.2 1.0
F2 7:BEF901 4.3 88.5 1.0
O2B 7:ADP903 4.3 89.2 1.0
OG 7:SER661 4.4 90.4 1.0
O2A 7:ADP903 4.5 89.2 1.0
CG 7:ASP488 4.5 86.1 1.0
CA 7:SER661 4.7 90.4 1.0
CE 7:LYS392 4.9 86.5 1.0

Magnesium binding site 2 out of 2 in 7o4j

Go back to Magnesium Binding Sites List in 7o4j
Magnesium binding site 2 out of 2 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex (Consensus) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:41.5
occ:1.00
OD1 A:ASP483 1.9 17.9 1.0
OD1 A:ASP485 2.1 21.6 1.0
OD2 A:ASP483 2.4 17.9 1.0
CG A:ASP483 2.5 17.9 1.0
OD1 A:ASP481 2.6 14.1 1.0
CG A:ASP485 3.0 21.6 1.0
OD2 A:ASP485 3.2 21.6 1.0
CG A:ASP481 3.3 14.1 1.0
OD2 A:ASP481 3.4 14.1 1.0
CB A:ASP483 3.9 17.9 1.0
CB A:ASP485 4.4 21.6 1.0
N A:ASP485 4.5 21.6 1.0
N A:ASP483 4.5 17.9 1.0
CA A:ASP483 4.6 17.9 1.0
C A:ASP483 4.7 17.9 1.0
CB A:ASP481 4.7 14.1 1.0
N A:GLY484 4.8 41.5 1.0
CA A:ASP485 4.8 21.6 1.0
O A:ASP481 4.9 14.1 1.0
NH2 A:ARG446 5.0 14.2 1.0
N A:ASP481 5.0 14.1 1.0

Reference:

S.Schilbach, S.Aibara, C.Dienemann, F.Grabbe, P.Cramer. Structure of Rna Polymerase II Pre-Initiation Complex at 2.9 Angstrom Defines Initial Dna Opening Cell(Cambridge,Mass.) 2021.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2021.05.012
Page generated: Thu Oct 3 02:32:44 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy