Magnesium in PDB 7o5h: Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit

All present enzymatic activity of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit:
2.1.1.182;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 167;

Binding sites:

The binding sites of Magnesium atom in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit (pdb code 7o5h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 167 binding sites of Magnesium where determined in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit, PDB code: 7o5h:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:37.6 occ:1.00 N7 A:G869 2.1 36.9 1.0 N7 A:G858 2.3 43.2 1.0 C5 A:G869 3.0 36.9 1.0 O6 A:G869 3.1 36.9 1.0 C8 A:G858 3.1 43.2 1.0 C8 A:G869 3.2 36.9 1.0 C5 A:G858 3.2 43.2 1.0 C6 A:G869 3.4 36.9 1.0 O6 A:G858 3.6 43.2 1.0 C6 A:G858 3.7 43.2 1.0 OP2 A:G858 3.8 43.2 1.0 C4 A:G869 4.2 36.9 1.0 N9 A:G858 4.2 43.2 1.0 C4 A:G858 4.2 43.2 1.0 OP2 A:C868 4.2 32.8 1.0 N9 A:G869 4.3 36.9 1.0 OP2 A:G869 4.3 36.9 1.0 O5' A:G858 4.7 43.2 1.0 N1 A:G869 4.7 36.9 1.0 C5 A:C857 4.7 49.0 1.0 P A:G858 4.9 43.2 1.0 N1 A:G858 4.9 43.2 1.0 C6 A:C857 5.0 49.0 1.0

Magnesium binding site 2 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:24.4 occ:1.00 O3' A:G1526 4.0 44.6 1.0 OP2 A:A816 4.2 29.7 1.0 O2' A:G1526 4.3 44.6 1.0 OP1 A:G731 4.4 35.6 1.0 OP2 A:G731 4.4 35.6 1.0 OP1 A:G730 4.5 32.6 1.0 OP1 A:U1527 4.6 44.4 1.0 P A:G731 4.7 35.6 1.0 N1 A:A814 4.7 29.8 1.0 O3' A:G730 4.7 32.6 1.0 C5' A:U1527 4.8 44.4 1.0 C4' A:G1526 4.9 44.6 1.0 C3' A:G1526 4.9 44.6 1.0 C2 A:A814 4.9 29.8 1.0 P A:U1527 5.0 44.4 1.0

Magnesium binding site 3 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:37.2 occ:1.00 OP2 A:C352 2.4 49.0 1.0 P A:C352 3.7 49.0 1.0 O2 A:C330 3.8 47.7 1.0 O5' A:C352 4.0 49.0 1.0 O4' A:G331 4.0 46.9 1.0 O4' A:C352 4.4 49.0 1.0 N1 A:A59 4.6 45.3 1.0 N7 A:G354 4.6 44.5 1.0 C1' A:G331 4.7 46.9 1.0 OP1 A:C352 4.7 49.0 1.0 C3' A:G351 4.7 66.6 1.0 C8 A:G354 4.8 44.5 1.0 O3' A:G351 4.8 66.6 1.0 C4' A:C352 4.8 49.0 1.0 C5' A:G351 4.9 66.6 1.0 C4' A:G331 4.9 46.9 1.0 C2 A:C330 4.9 47.7 1.0 O2' A:C330 4.9 47.7 1.0 C4' A:G351 5.0 66.6 1.0 OP1 A:G354 5.0 44.5 1.0

Magnesium binding site 4 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:29.3 occ:1.00 OP1 A:C578 2.2 30.6 1.0 P A:C578 3.3 30.6 1.0 O3' A:G577 3.3 27.9 1.0 OP2 A:C817 3.7 32.5 1.0 OP2 A:C576 3.8 29.6 1.0 OP1 A:U820 4.3 32.8 1.0 OP2 A:C578 4.3 30.6 1.0 O5' A:C578 4.5 30.6 1.0 C5' A:C578 4.6 30.6 1.0 P A:C817 4.6 32.5 1.0 C3' A:G577 4.7 27.9 1.0 O3' A:G575 4.7 29.6 1.0 OP1 A:C817 4.7 32.5 1.0 O2' A:G575 4.8 29.6 1.0 P A:C576 4.9 29.6 1.0 C5' A:G821 4.9 29.9 1.0 O5' A:C817 5.0 32.5 1.0

Magnesium binding site 5 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:27.2 occ:1.00 OP1 A:A572 2.3 30.4 1.0 N6 A:A819 3.4 33.8 1.0 N1 A:A819 3.5 33.8 1.0 P A:A572 3.6 30.4 1.0 C6 A:A819 3.9 33.8 1.0 O3' A:U571 4.0 31.2 1.0 O5' A:A572 4.2 30.4 1.0 OP1 A:A573 4.6 30.1 1.0 C2 A:A819 4.6 33.8 1.0 MG A:MG1606 4.7 27.8 1.0 OP2 A:A572 4.8 30.4 1.0 N7 A:G1529 5.0 38.8 1.0

Magnesium binding site 6 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:27.8 occ:1.00 OP2 A:A572 2.1 30.4 1.0 OP2 A:A574 2.5 30.1 1.0 OP1 A:A572 2.7 30.4 1.0 P A:A572 2.7 30.4 1.0 OP2 A:A573 2.9 30.1 1.0 O5' A:A572 3.6 30.4 1.0 P A:A574 3.7 30.1 1.0 C2 A:A819 3.9 33.8 1.0 P A:A573 4.0 30.1 1.0 OP1 A:A573 4.0 30.1 1.0 N1 A:A819 4.0 33.8 1.0 OP1 A:U571 4.1 31.2 1.0 OP1 A:A574 4.1 30.1 1.0 O3' A:U571 4.1 31.2 1.0 O5' A:U571 4.2 31.2 1.0 C5' A:A572 4.4 30.4 1.0 C5' A:U571 4.5 31.2 1.0 N3 A:A819 4.6 33.8 1.0 MG A:MG1605 4.7 27.2 1.0 P A:U571 4.7 31.2 1.0 O5' A:A574 4.7 30.1 1.0 O3' A:A573 4.8 30.1 1.0 C3' A:U571 4.8 31.2 1.0 C6 A:A819 5.0 33.8 1.0

Magnesium binding site 7 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:27.1 occ:1.00 OP1 A:C576 2.2 29.6 1.0 P A:C576 3.3 29.6 1.0 OP2 A:C576 3.5 29.6 1.0 OP1 A:U820 3.9 32.8 1.0 O5' A:C576 4.3 29.6 1.0 C5 A:C817 4.3 32.5 1.0 OP1 A:C817 4.3 32.5 1.0 O3' A:G575 4.5 29.6 1.0 OP1 A:G575 4.6 29.6 1.0 OP2 A:G577 4.8 27.9 1.0 O5' A:G575 4.9 29.6 1.0 O3' A:A819 4.9 33.8 1.0 C3' A:G575 4.9 29.6 1.0 C6 A:C817 5.0 32.5 1.0

Magnesium binding site 8 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:27.8 occ:1.00 OP2 A:G760 2.8 35.7 1.0 OP1 A:A759 2.8 34.1 1.0 O6 A:G761 3.5 36.4 1.0 N7 A:G761 3.6 36.4 1.0 P A:A759 3.7 34.1 1.0 O5' A:A759 3.8 34.1 1.0 OP2 A:A759 4.2 34.1 1.0 C6 A:G761 4.3 36.4 1.0 P A:G760 4.3 35.7 1.0 C5 A:G761 4.3 36.4 1.0 C5' A:A759 4.6 34.1 1.0 O4 A:U762 4.7 36.8 1.0 C8 A:G761 4.7 36.4 1.0 N3 A:C576 4.9 29.6 1.0 C8 A:G760 4.9 35.7 1.0 N6 A:A579 4.9 33.9 1.0 N7 A:G760 5.0 35.7 1.0

Magnesium binding site 9 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:38.3 occ:1.00 OP1 A:A547 2.1 46.6 1.0 P A:A547 3.5 46.6 1.0 OP1 A:G548 3.7 41.9 1.0 N7 A:G402 4.2 44.6 1.0 OP2 A:A547 4.2 46.6 1.0 O3' A:A546 4.3 46.1 1.0 O5' A:G548 4.3 41.9 1.0 O6 A:G402 4.4 44.6 1.0 N4 A:C403 4.5 47.3 1.0 O5' A:A547 4.5 46.6 1.0 N4 A:C401 4.5 43.4 1.0 C5' A:A547 4.5 46.6 1.0 C5 A:C401 4.6 43.4 1.0 P A:G548 4.7 41.9 1.0 C4 A:C401 4.7 43.4 1.0 C4' A:A547 4.9 46.6 1.0 C5 A:G402 5.0 44.6 1.0

Magnesium binding site 10 out of 167 in the Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Ribosomal Methyltransferase Ksga Bound to Small Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:36.5 occ:1.00 OP2 A:A560 2.1 38.6 1.0 P A:A560 3.6 38.6 1.0 OP1 A:U562 3.6 38.0 1.0 N2 A:G566 4.0 39.1 1.0 OP1 A:G557 4.1 38.5 1.0 O3' A:A559 4.2 39.9 1.0 N1 A:G566 4.4 39.1 1.0 OP1 A:A563 4.4 35.6 1.0 OP2 A:G558 4.4 38.8 1.0 O5' A:A560 4.4 38.6 1.0 OP1 A:A560 4.6 38.6 1.0 C5' A:A560 4.7 38.6 1.0 C2 A:G566 4.7 39.1 1.0 O2' A:A559 4.8 39.9 1.0 P A:U562 4.8 38.0 1.0 OP1 A:G558 4.9 38.8 1.0 O5' A:U562 5.0 38.0 1.0

N.C.Stephan, A.B.Ries, D.Boehringer, N.Ban. Structural Basis of Successive Adenosine Modifications By the Conserved Ribosomal Methyltransferase Ksga Nucleic Acids Res. 2021.
ISSN: ESSN 1362-4962
DOI: 10.1093/NAR/GKAB430