Magnesium in PDB 7oaw: Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+

The structure of Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+, PDB code: 7oaw was solved by M.Mieczkowski, V.Pena, C.Hoebartner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.44 / 2.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.071, 100.031, 113.865, 90, 90, 90
R / Rfree (%)	21.8 / 26.5

The structure of Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+ also contains other interesting chemical elements:

Potassium	(K)	12 atoms
Chlorine	(Cl)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+ (pdb code 7oaw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+, PDB code: 7oaw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg106 b:101.8 occ:1.00 O2A A:GTP101 2.4 193.0 1.0 PA A:GTP101 3.7 191.9 1.0 O1G A:GTP101 3.8 197.3 1.0 O3G A:GTP101 4.2 199.6 1.0 O1A A:GTP101 4.2 191.9 1.0 O5' A:GTP101 4.3 188.6 1.0 PG A:GTP101 4.6 200.1 1.0 O2B A:GTP101 4.6 196.6 1.0 O3A A:GTP101 5.0 196.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Chili Rna Aptamer in Complex with Dmhbi+ within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg106 b:123.3 occ:1.00 N7 D:GTP103 2.1 127.5 1.0 O3G D:GTP103 2.7 170.3 1.0 C8 D:GTP103 2.9 129.1 1.0 C5 D:GTP103 3.3 131.3 1.0 O6 D:GTP103 3.6 137.7 1.0 C6 D:GTP103 3.9 136.5 1.0 O3A D:GTP103 3.9 164.9 1.0 PG D:GTP103 4.0 168.1 1.0 O2B D:GTP103 4.0 168.5 1.0 N9 D:GTP103 4.1 130.7 1.0 O1G D:GTP103 4.2 167.7 1.0 C4 D:GTP103 4.3 132.2 1.0 PB D:GTP103 4.5 168.6 1.0 O3B D:GTP103 4.8 167.1 1.0 O1A D:GTP103 4.8 156.9 1.0

M.Mieczkowski, C.Steinmetzger, I.Bessi, A.K.Lenz, A.Schmiedel, M.Holzapfel, C.Lambert, V.Pena, C.Hoebartner. Large Stokes Shift Fluorescence Activation in An Rna Aptamer By Intermolecular Proton Transfer to Guanine Nat Commun 2021.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-021-23932-0