Magnesium in PDB 7oeb: Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]

Enzymatic activity of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]

All present enzymatic activity of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]:
2.7.7.48;

Other elements in 7oeb:

The structure of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] (pdb code 7oeb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo], PDB code: 7oeb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7oeb

Go back to Magnesium Binding Sites List in 7oeb
Magnesium binding site 1 out of 2 in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg2302

b:19.4
occ:1.00
OD1 L:ASP1332 2.2 20.8 1.0
OD1 L:ASP1190 2.7 24.0 1.0
OE1 L:GLU1382 2.8 16.7 1.0
CG L:ASP1332 3.2 20.8 1.0
O L:MET1189 3.3 20.9 1.0
OD2 L:ASP1332 3.6 20.8 1.0
CD L:GLU1382 3.6 16.7 1.0
CG L:ASP1190 3.7 24.0 1.0
OE2 L:GLU1382 3.7 16.7 1.0
C L:MET1189 3.8 20.9 1.0
N L:MET1189 4.1 20.9 1.0
O L:GLN1333 4.1 17.9 1.0
OD2 L:ASP1190 4.2 24.0 1.0
N L:ASP1190 4.3 24.0 1.0
O L:GLU1382 4.3 16.7 1.0
N L:GLN1333 4.3 17.9 1.0
CB L:ASP1332 4.4 20.8 1.0
C L:SER1188 4.5 18.7 1.0
CA L:ASP1332 4.5 20.8 1.0
CA L:MET1189 4.6 20.9 1.0
CA L:ASP1190 4.6 24.0 1.0
CB L:SER1188 4.6 18.7 1.0
CB L:ASP1190 4.8 24.0 1.0
C L:GLU1382 4.8 16.7 1.0
CA L:SER1188 4.8 18.7 1.0
CA L:PHE1383 4.8 17.3 1.0
C L:ASP1332 5.0 20.8 1.0
C L:GLN1333 5.0 17.9 1.0
CG L:GLU1382 5.0 16.7 1.0

Magnesium binding site 2 out of 2 in 7oeb

Go back to Magnesium Binding Sites List in 7oeb
Magnesium binding site 2 out of 2 in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg2303

b:57.9
occ:1.00
OE2 L:GLU51 2.7 73.5 1.0
CG L:ASP89 2.9 77.6 1.0
CD L:GLU51 2.9 73.5 1.0
CB L:ASP89 3.1 77.6 1.0
OD2 L:ASP89 3.1 77.6 1.0
OD1 L:ASP89 3.2 77.6 1.0
OE1 L:GLU51 3.3 73.5 1.0
CG L:GLU51 3.7 73.5 1.0
CA L:ASP89 3.8 77.6 1.0
N L:ASP89 4.6 77.6 1.0
CB L:GLU51 4.8 73.5 1.0
OD1 L:ASP66 4.9 88.0 1.0
OE2 L:GLU102 4.9 74.1 1.0
O L:ASN1095 4.9 66.0 1.0
OD1 L:ASN1095 4.9 66.0 1.0
C L:ASP89 4.9 77.6 1.0

Reference:

T.Kouba, D.Vogel, S.Thorkelsson, E.Quemin, H.William, M.Milewski, C.Busch, S.Gunther, K.Grunewald, M.Rosenthal, S.Cusack. Conformational Changes in Lassa Virus L Protein Associated with Promoter Binding and Rna Synthesis Activity To Be Published.
Page generated: Fri Dec 17 10:51:25 2021

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