Magnesium in PDB 7oh6: Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State

Enzymatic activity of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State

All present enzymatic activity of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State:
7.6.2.1;

Other elements in 7oh6:

The structure of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Fluorine (F) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State (pdb code 7oh6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State, PDB code: 7oh6:

Magnesium binding site 1 out of 1 in 7oh6

Go back to Magnesium Binding Sites List in 7oh6
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1503

b:88.6
occ:1.00
F4 A:ALF1502 1.7 90.0 1.0
O A:HOH1601 2.0 90.5 1.0
OD2 A:ASP560 2.0 85.8 1.0
O A:HOH1602 2.0 88.7 1.0
OD1 A:ASP954 2.1 87.4 1.0
O A:THR562 2.1 88.5 1.0
CG A:ASP560 2.9 85.8 1.0
CG A:ASP954 3.1 87.4 1.0
AL A:ALF1502 3.3 90.0 1.0
F2 A:ALF1502 3.3 90.0 1.0
OD1 A:ASP560 3.3 85.8 1.0
C A:THR562 3.3 88.5 1.0
OD2 A:ASP954 3.5 87.4 1.0
O A:ASP954 3.8 87.4 1.0
OG1 A:THR562 3.9 88.5 1.0
F1 A:ALF1502 4.1 90.0 1.0
N A:GLY563 4.2 87.4 1.0
CA A:THR562 4.2 88.5 1.0
N A:THR562 4.3 88.5 1.0
CB A:ASP560 4.3 85.8 1.0
CA A:GLY563 4.3 87.4 1.0
C A:ASP954 4.4 87.4 1.0
CB A:ASP954 4.5 87.4 1.0
CB A:THR562 4.5 88.5 1.0
N A:ASP954 4.7 87.4 1.0
CG2 A:THR564 4.8 86.3 1.0
CA A:ASP954 4.8 87.4 1.0
O A:GLY341 4.8 102.9 1.0
N A:THR564 4.8 86.3 1.0
C A:LYS561 4.8 86.4 1.0
F3 A:ALF1502 5.0 90.0 1.0

Reference:

M.Timcenko, T.Dieudonne, C.Montigny, T.Boesen, J.A.Lyons, G.Lenoir, P.Nissen. Structural Basis of Substrate-Independent Phosphorylation in A P4-Atpase Lipid Flippase J.Mol.Biol. 67062 2021.
ISSN: ESSN 1089-8638
PubMed: 34023399
DOI: 10.1016/J.JMB.2021.167062
Page generated: Mon Jul 12 14:53:39 2021

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