Magnesium in PDB 7oh7: Cryo-Em Structure of DRS2P-CDC50P in the E1-Amppcp State with PI4P Bound

Enzymatic activity of Cryo-Em Structure of DRS2P-CDC50P in the E1-Amppcp State with PI4P Bound

All present enzymatic activity of Cryo-Em Structure of DRS2P-CDC50P in the E1-Amppcp State with PI4P Bound:
7.6.2.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of DRS2P-CDC50P in the E1-Amppcp State with PI4P Bound (pdb code 7oh7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of DRS2P-CDC50P in the E1-Amppcp State with PI4P Bound, PDB code: 7oh7:

Magnesium binding site 1 out of 1 in 7oh7

Go back to Magnesium Binding Sites List in 7oh7
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of DRS2P-CDC50P in the E1-Amppcp State with PI4P Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of DRS2P-CDC50P in the E1-Amppcp State with PI4P Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1503

b:112.7
occ:1.00
OD1 A:ASP954 2.1 110.5 1.0
O A:THR562 2.1 113.6 1.0
O A:HOH1601 2.1 112.9 1.0
OD2 A:ASP560 2.1 97.7 1.0
O A:HOH1603 2.1 108.0 1.0
O A:HOH1602 2.1 113.0 1.0
CG A:ASP954 2.9 110.5 1.0
OD2 A:ASP954 3.1 110.5 1.0
CG A:ASP560 3.3 97.7 1.0
C A:THR562 3.3 113.6 1.0
O A:ASP954 3.9 110.5 1.0
OD1 A:ASP560 3.9 97.7 1.0
CA A:THR562 4.2 113.6 1.0
CB A:THR562 4.2 113.6 1.0
N A:GLY563 4.2 110.3 1.0
CB A:ASP560 4.3 97.7 1.0
CA A:GLY563 4.3 110.3 1.0
CB A:ASP954 4.3 110.5 1.0
N A:THR562 4.4 113.6 1.0
C A:ASP954 4.6 110.5 1.0
N A:ASP954 4.6 110.5 1.0
ND2 A:ASN957 4.6 110.5 1.0
CG2 A:THR562 4.6 113.6 1.0
CA A:ASP954 4.7 110.5 1.0
OD1 A:ASN957 4.9 110.5 1.0
N A:THR564 5.0 102.8 1.0

Reference:

M.Timcenko, T.Dieudonne, C.Montigny, T.Boesen, J.A.Lyons, G.Lenoir, P.Nissen. Structural Basis of Substrate-Independent Phosphorylation in A P4-Atpase Lipid Flippase J.Mol.Biol. 67062 2021.
ISSN: ESSN 1089-8638
PubMed: 34023399
DOI: 10.1016/J.JMB.2021.167062
Page generated: Mon Jul 12 14:53:44 2021

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