Magnesium in PDB 7ond: Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye

Enzymatic activity of Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye

All present enzymatic activity of Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye:
3.8.1.5;

Protein crystallography data

The structure of Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye, PDB code: 7ond was solved by A.Stein, A.D.Liang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.10 / 1.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.586, 68.558, 81.179, 90, 98.57, 90
R / Rfree (%) 16.3 / 18.6

Other elements in 7ond:

The structure of Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye (pdb code 7ond). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye, PDB code: 7ond:

Magnesium binding site 1 out of 1 in 7ond

Go back to Magnesium Binding Sites List in 7ond
Magnesium binding site 1 out of 1 in the Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg403

b:15.7
occ:1.00
O B:HOH689 2.0 16.3 1.0
OE1 B:GLU183 2.1 13.7 1.0
O B:HOH596 2.1 13.7 1.0
O B:HOH634 2.1 13.3 1.0
O B:HOH639 2.1 15.1 1.0
CD B:GLU183 3.2 13.2 1.0
CG B:GLU183 3.8 11.6 1.0
OD2 B:ASP187 4.1 11.5 1.0
OD1 B:ASP187 4.1 10.9 1.0
NH1 B:ARG190 4.2 11.3 1.0
OE2 B:GLU183 4.2 15.7 1.0
O B:HOH766 4.2 24.4 1.0
CG B:ASP187 4.6 10.7 1.0

Reference:

C.Miro-Vinyals, A.Stein, S.Fischer, T.R.Ward, A.D.Liang. Halotag Engineering For Enhanced Fluorogenicity and Kinetics with A Styrylpyridine Dye To Be Published.
Page generated: Sat Aug 21 16:47:40 2021

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