Magnesium in PDB 7oo3: Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1)

Enzymatic activity of Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1)

All present enzymatic activity of Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1):
2.7.7.6;

Other elements in 7oo3:

The structure of Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1) also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1) (pdb code 7oo3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1), PDB code: 7oo3:

Magnesium binding site 1 out of 1 in 7oo3

Go back to Magnesium Binding Sites List in 7oo3
Magnesium binding site 1 out of 1 in the Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pol II-Csb-Csa-DDB1-Uvssa (STRUCTURE1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2003

b:29.8
occ:1.00
OD1 A:ASP495 1.9 6.7 1.0
OD1 A:ASP499 1.9 9.4 1.0
O3' P:A10 2.1 16.7 1.0
OD1 A:ASP497 2.1 7.9 1.0
OD2 A:ASP499 2.2 9.4 1.0
CG A:ASP499 2.3 9.4 1.0
HO2' P:A10 2.7 16.7 1.0
CG A:ASP495 3.0 6.7 1.0
CG A:ASP497 3.2 7.9 1.0
H A:ASP495 3.3 6.7 1.0
C3' P:A10 3.4 16.7 1.0
OD2 A:ASP497 3.5 7.9 1.0
H4' P:A10 3.5 16.7 1.0
O2' P:A10 3.5 16.7 1.0
OD2 A:ASP495 3.5 6.7 1.0
H A:ASP497 3.7 7.9 1.0
O A:ASP495 3.7 6.7 1.0
CB A:ASP499 3.8 9.4 1.0
C4' P:A10 3.9 16.7 1.0
HH21 A:ARG460 3.9 10.2 1.0
C2' P:A10 4.0 16.7 1.0
H A:ASP499 4.1 9.4 1.0
H3' P:A10 4.1 16.7 1.0
N A:ASP495 4.1 6.7 1.0
H5'' P:A10 4.1 16.7 1.0
C A:ASP495 4.2 6.7 1.0
HB2 A:ASP499 4.2 9.4 1.0
CB A:ASP495 4.3 6.7 1.0
HB3 A:ASP499 4.3 9.4 1.0
CA A:ASP495 4.4 6.7 1.0
N A:ASP499 4.4 9.4 1.0
HA A:ASP499 4.4 9.4 1.0
N A:ASP497 4.5 7.9 1.0
CA A:ASP499 4.5 9.4 1.0
H2' P:A10 4.5 16.7 1.0
CB A:ASP497 4.5 7.9 1.0
C5' P:A10 4.6 16.7 1.0
NH2 A:ARG460 4.6 10.2 1.0
O A:ASP497 4.6 7.9 1.0
HA A:ALA494 4.7 7.9 1.0
C A:ASP497 4.7 7.9 1.0
HE A:ARG460 4.7 10.2 1.0
HB2 A:ASP495 4.8 6.7 1.0
CA A:ASP497 4.8 7.9 1.0
HB3 A:ASP495 4.9 6.7 1.0
HB3 A:ASP497 5.0 7.9 1.0
HH22 A:ARG460 5.0 10.2 1.0

Reference:

G.Kokic, F.R.Wagner, A.Chernev, H.Urlaub, P.Cramer. Structural Basis of Human Transcription-Dna Repair Coupling. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34526721
DOI: 10.1038/S41586-021-03906-4
Page generated: Fri Nov 5 15:31:44 2021

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