Magnesium in PDB 7op5: Cryo-Em Structure of P5B-Atpase E2P

The structure of Cryo-Em Structure of P5B-Atpase E2P also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of P5B-Atpase E2P (pdb code 7op5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of P5B-Atpase E2P, PDB code: 7op5:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of P5B-Atpase E2P


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of P5B-Atpase E2P within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1402 b:37.3 occ:1.00 F2 A:BEF1401 1.9 34.9 1.0 F1 A:BEF1401 2.2 34.9 1.0 BE A:BEF1401 2.4 34.9 1.0 F3 A:BEF1401 3.0 34.9 1.0 O A:MET500 3.5 52.7 1.0 CB A:ASN1098 3.7 42.8 1.0 OD1 A:ASP1095 3.9 46.8 1.0 CA A:GLY1096 4.0 52.8 1.0 CA A:MET500 4.2 52.7 1.0 C A:MET500 4.2 52.7 1.0 ND2 A:ASN1098 4.3 42.8 1.0 N A:GLY1096 4.3 52.8 1.0 O A:SER499 4.3 51.6 1.0 OD1 A:ASP680 4.4 31.9 1.0 N A:ASN1098 4.5 42.8 1.0 CG A:ASN1098 4.6 42.8 1.0 C A:GLY1096 4.6 52.8 1.0 CA A:ASN1098 4.7 42.8 1.0 CA A:GLY503 4.7 44.4 1.0 O A:THR682 4.7 37.2 1.0 CG2 A:THR682 4.8 37.2 1.0 OD1 A:ASP1099 4.9 45.0 1.0 OD2 A:ASP680 5.0 31.9 1.0 CG A:ASP680 5.0 31.9 1.0 CB A:MET500 5.0 52.7 1.0 CG A:ASP1095 5.0 46.8 1.0 N A:GLY503 5.0 44.4 1.0

L.Ping, K.T.Wang, N.Salustros, C.Gronberg, P.E.Gourdon. Structure and Transport Mechanism of P5B-Atpases To Be Published.