Magnesium in PDB 7oqy: Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase

Enzymatic activity of Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase

All present enzymatic activity of Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase:
2.7.7.6;

Other elements in 7oqy:

The structure of Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase also contains other interesting chemical elements:

Iron (Fe) 3 atoms
Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase (pdb code 7oqy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase, PDB code: 7oqy:

Magnesium binding site 1 out of 1 in 7oqy

Go back to Magnesium Binding Sites List in 7oqy
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Cellular Negative Regulator TFS4 Bound to the Archaeal Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:35.3
occ:1.00
 OD1 A:ASP458 2.0 31.3 1.0
OD1 A:ASP460 2.1 29.9 1.0
OD2 A:ASP458 2.2 31.3 1.0
OD2 A:ASP460 2.2 29.9 1.0
CG A:ASP458 2.3 31.3 1.0
CG A:ASP460 2.4 29.9 1.0
CB A:ASP456 3.4 30.8 1.0
CB A:ASP458 3.8 31.3 1.0
CB A:ASP460 4.0 29.9 1.0
CG A:ASP456 4.1 30.8 1.0
OD2 A:ASP456 4.1 30.8 1.0
CA A:ASP456 4.3 30.8 1.0
O A:ASP456 4.3 30.8 1.0
N A:ASP458 4.3 31.3 1.0
C A:ASP456 4.3 30.8 1.0
N A:ASP456 4.5 30.8 1.0
CA A:ASP458 4.5 31.3 1.0
N A:ASP460 4.7 29.9 1.0
CA A:ASP460 4.7 29.9 1.0
C A:ASP458 4.9 31.3 1.0
NH2 A:ARG421 5.0 24.2 1.0
N A:PHE457 5.0 26.8 1.0

Reference:

S.Pilotto, T.Fouqueau, N.Lukoyanova, C.Sheppard, S.Lucas-Staat, L.M.Diaz-Santin, D.Matelska, D.Prangishvili, A.C.M.Cheung, F.Werner. Structural Basis of Rna Polymerase Inhibition By Viral and Host Factors Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Thu Oct 3 03:30:37 2024

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