Magnesium in PDB 7oz2: Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket

Enzymatic activity of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket

All present enzymatic activity of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket:
2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16;

Protein crystallography data

The structure of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket, PDB code: 7oz2 was solved by S.E.Martinez, A.K.Singh, K.Das, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	81.44 / 2.85
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	310.638, 62.07, 168.239, 90, 104.51, 90
*R / R_free (%)*	21.7 / 25.7

Other elements in 7oz2:

The structure of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket also contains other interesting chemical elements:

Cadmium

(Cd)

27 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket (pdb code 7oz2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket, PDB code: 7oz2:

Magnesium binding site 1 out of 1 in 7oz2

Go back to

Magnesium Binding Sites List in 7oz2

Magnesium binding site 1 out of 1 in the Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna Showing A Transient P-Pocket within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Mg604 b:91.0 occ:1.00	OD1	C:ASP110	2.1	98.7	1.0
	OD1	C:ASP186	2.1	97.0	1.0
	OD2	C:ASP185	2.1	85.4	1.0
	OD2	C:ASP186	2.2	105.7	1.0
	CG	C:ASP186	2.3	102.9	1.0
	CG	C:ASP110	2.8	102.2	1.0
	OD2	C:ASP110	3.1	101.4	1.0
	CG	C:ASP185	3.1	91.4	1.0
	OD1	C:ASP185	3.5	90.4	1.0
	CB	C:ASP186	3.7	94.8	1.0
	N	C:ASP186	4.0	89.5	1.0
	O3'	F:DG822	4.0	86.8	1.0
	CA	C:ASP186	4.1	91.0	1.0
	CB	C:ASP110	4.2	99.5	1.0
	CB	C:ASP185	4.2	91.5	1.0
	C	C:ASP185	4.3	93.3	1.0
	O	C:ASP185	4.7	96.1	1.0
	CA	C:ASP185	4.9	91.0	1.0
	CA	C:ASP110	4.9	95.3	1.0

Reference:

A.K.Singh, S.E.Martinez, W.Gu, H.Nguyen, D.Schols, P.Herdewijn, S.De Jonghe, K.Das. Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket. To Be Published.

Page generated: Thu Oct 3 03:56:49 2024

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