Magnesium in PDB 7p06: Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp

Other elements in 7p06:

The structure of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp also contains other interesting chemical elements:

Vanadium (V) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp (pdb code 7p06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp, PDB code: 7p06:

Magnesium binding site 1 out of 1 in 7p06

Go back to Magnesium Binding Sites List in 7p06
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1702

b:55.4
occ:1.00
O1G A:AOV1703 1.9 59.0 1.0
O1B A:AOV1703 1.9 59.0 1.0
HE22 A:GLN951 2.0 60.1 1.0
OE1 A:GLN951 2.0 60.1 1.0
OG1 A:THR912 2.3 54.4 1.0
NE2 A:GLN951 2.5 60.1 1.0
CD A:GLN951 2.5 60.1 1.0
HG1 A:THR912 2.9 54.4 1.0
VG A:AOV1703 3.1 59.0 1.0
HB A:THR912 3.1 54.4 1.0
PB A:AOV1703 3.2 59.0 1.0
HE21 A:GLN951 3.2 60.1 1.0
CB A:THR912 3.3 54.4 1.0
H2G1 A:AOV1703 3.6 59.0 1.0
O4G A:AOV1703 3.6 59.0 1.0
O3B A:AOV1703 3.7 59.0 1.0
O2G A:AOV1703 3.7 59.0 1.0
HB2 A:SER310 3.7 59.9 1.0
H4G1 A:AOV1703 3.8 59.0 1.0
O3A A:AOV1703 3.8 59.0 1.0
HG21 A:THR912 3.8 54.4 1.0
H A:THR912 3.9 54.4 1.0
H A:GLY311 3.9 59.0 1.0
CG A:GLN951 3.9 60.1 1.0
H2A A:AOV1703 4.0 59.0 1.0
CG2 A:THR912 4.1 54.4 1.0
HG2 A:GLN951 4.2 60.1 1.0
HB3 A:GLN951 4.2 60.1 1.0
O2B A:AOV1703 4.4 59.0 1.0
OD1 A:ASP1035 4.5 57.6 1.0
CA A:THR912 4.5 54.4 1.0
N A:THR912 4.5 54.4 1.0
OD2 A:ASP1035 4.5 57.6 1.0
HG3 A:GLN951 4.5 60.1 1.0
CB A:GLN951 4.5 60.1 1.0
HB2 A:GLN951 4.6 60.1 1.0
O2A A:AOV1703 4.6 59.0 1.0
HG2 A:GLU1036 4.6 58.6 1.0
CB A:SER310 4.6 59.9 1.0
N A:GLY311 4.7 59.0 1.0
HB2 A:LYS911 4.8 54.2 1.0
HG22 A:THR912 4.8 54.4 1.0
HG23 A:THR912 4.8 54.4 1.0
PA A:AOV1703 4.8 59.0 1.0
O3G A:AOV1703 4.8 59.0 1.0
HB3 A:SER310 4.8 59.9 1.0
HA A:THR912 4.8 54.4 1.0
CG A:ASP1035 4.8 57.6 1.0
H A:GLY312 4.9 56.1 1.0
OE2 A:GLU1036 4.9 58.6 1.0
HG3 A:GLU1036 4.9 58.6 1.0
HH22 A:ARG307 5.0 60.9 1.0
HA A:SER310 5.0 59.9 1.0

Reference:

A.Harris, M.Wagner, D.Du, S.Raschka, L.M.Nentwig, H.Gohlke, S.H.J.Smits, B.F.Luisi, L.Schmitt. Structure and Efflux Mechanism of the Yeast Pleiotropic Drug Resistance Transporter PDR5. Nat Commun V. 12 5254 2021.
ISSN: ESSN 2041-1723
PubMed: 34489436
DOI: 10.1038/S41467-021-25574-8
Page generated: Thu Nov 25 10:09:12 2021

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