Magnesium in PDB 7p06: Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp

Other elements in 7p06:

The structure of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp also contains other interesting chemical elements:

Vanadium (V) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp (pdb code 7p06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp, PDB code: 7p06:

Magnesium binding site 1 out of 1 in 7p06

Go back to Magnesium Binding Sites List in 7p06
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1702

b:55.4
occ:1.00
O1G A:AOV1703 1.9 59.0 1.0
O1B A:AOV1703 1.9 59.0 1.0
HE22 A:GLN951 2.0 60.1 1.0
OE1 A:GLN951 2.0 60.1 1.0
OG1 A:THR912 2.3 54.4 1.0
NE2 A:GLN951 2.5 60.1 1.0
CD A:GLN951 2.5 60.1 1.0
HG1 A:THR912 2.9 54.4 1.0
VG A:AOV1703 3.1 59.0 1.0
HB A:THR912 3.1 54.4 1.0
PB A:AOV1703 3.2 59.0 1.0
HE21 A:GLN951 3.2 60.1 1.0
CB A:THR912 3.3 54.4 1.0
H2G1 A:AOV1703 3.6 59.0 1.0
O4G A:AOV1703 3.6 59.0 1.0
O3B A:AOV1703 3.7 59.0 1.0
O2G A:AOV1703 3.7 59.0 1.0
HB2 A:SER310 3.7 59.9 1.0
H4G1 A:AOV1703 3.8 59.0 1.0
O3A A:AOV1703 3.8 59.0 1.0
HG21 A:THR912 3.8 54.4 1.0
H A:THR912 3.9 54.4 1.0
H A:GLY311 3.9 59.0 1.0
CG A:GLN951 3.9 60.1 1.0
H2A A:AOV1703 4.0 59.0 1.0
CG2 A:THR912 4.1 54.4 1.0
HG2 A:GLN951 4.2 60.1 1.0
HB3 A:GLN951 4.2 60.1 1.0
O2B A:AOV1703 4.4 59.0 1.0
OD1 A:ASP1035 4.5 57.6 1.0
CA A:THR912 4.5 54.4 1.0
N A:THR912 4.5 54.4 1.0
OD2 A:ASP1035 4.5 57.6 1.0
HG3 A:GLN951 4.5 60.1 1.0
CB A:GLN951 4.5 60.1 1.0
HB2 A:GLN951 4.6 60.1 1.0
O2A A:AOV1703 4.6 59.0 1.0
HG2 A:GLU1036 4.6 58.6 1.0
CB A:SER310 4.6 59.9 1.0
N A:GLY311 4.7 59.0 1.0
HB2 A:LYS911 4.8 54.2 1.0
HG22 A:THR912 4.8 54.4 1.0
HG23 A:THR912 4.8 54.4 1.0
PA A:AOV1703 4.8 59.0 1.0
O3G A:AOV1703 4.8 59.0 1.0
HB3 A:SER310 4.8 59.9 1.0
HA A:THR912 4.8 54.4 1.0
CG A:ASP1035 4.8 57.6 1.0
H A:GLY312 4.9 56.1 1.0
OE2 A:GLU1036 4.9 58.6 1.0
HG3 A:GLU1036 4.9 58.6 1.0
HH22 A:ARG307 5.0 60.9 1.0
HA A:SER310 5.0 59.9 1.0

Reference:

A.Harris, M.Wagner, D.Du, S.Raschka, L.M.Nentwig, H.Gohlke, S.H.J.Smits, B.F.Luisi, L.Schmitt. Structure and Efflux Mechanism of the Yeast Pleiotropic Drug Resistance Transporter PDR5. Nat Commun V. 12 5254 2021.
ISSN: ESSN 2041-1723
PubMed: 34489436
DOI: 10.1038/S41467-021-25574-8
Page generated: Thu Nov 25 10:09:12 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy