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Magnesium in PDB 7p1g: Structure of the P. Aeruginosa Exoy-F-Actin Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the P. Aeruginosa Exoy-F-Actin Complex (pdb code 7p1g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 10 binding sites of Magnesium where determined in the Structure of the P. Aeruginosa Exoy-F-Actin Complex, PDB code: 7p1g:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 10 in 7p1g

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Magnesium binding site 1 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg401

b:54.4
occ:1.00
 OD1 M:ASP212 1.8 63.6 1.0
NE2 M:HIS291 2.0 53.4 1.0
CG M:ASP212 2.6 63.6 1.0
OD2 M:ASP212 2.9 63.6 1.0
CE1 M:HIS291 3.0 53.4 1.0
CD2 M:HIS291 3.0 53.4 1.0
O2' M:GH3402 3.5 73.2 1.0
O M:GLY82 3.8 62.4 1.0
C3' M:GH3402 3.8 73.2 1.0
CB M:ASP214 3.9 54.0 1.0
CG M:ASP214 4.0 54.0 1.0
CB M:ASP212 4.0 63.6 1.0
ND1 M:HIS291 4.1 53.4 1.0
CG M:HIS291 4.1 53.4 1.0
C2' M:GH3402 4.1 73.2 1.0
OD1 M:ASP214 4.3 54.0 1.0
CA M:ASP214 4.5 54.0 1.0
OD2 M:ASP214 4.5 54.0 1.0
C M:GLY82 4.8 62.4 1.0
N M:ASP214 5.0 54.0 1.0

Magnesium binding site 2 out of 10 in 7p1g

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Magnesium binding site 2 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:20.9
occ:1.00
 O1B C:ADP402 1.9 33.3 1.0
O4 C:PO4403 2.1 35.8 1.0
PB C:ADP402 3.3 33.3 1.0
O1A C:ADP402 3.4 33.3 1.0
P C:PO4403 3.6 35.8 1.0
O3B C:ADP402 3.8 33.3 1.0
O1 C:PO4403 4.0 35.8 1.0
OD2 C:ASP11 4.1 22.9 1.0
OD1 C:ASP154 4.2 18.1 1.0
OE1 C:GLN137 4.2 22.6 1.0
O3A C:ADP402 4.2 33.3 1.0
O2B C:ADP402 4.3 33.3 1.0
CA C:GLY156 4.3 23.4 1.0
NE2 C:GLN137 4.3 22.6 1.0
CD C:GLN137 4.4 22.6 1.0
O2 C:PO4403 4.4 35.8 1.0
O3 C:PO4403 4.5 35.8 1.0
OD2 C:ASP154 4.5 18.1 1.0
OD1 C:ASP11 4.5 22.9 1.0
PA C:ADP402 4.5 33.3 1.0
CG2 C:VAL339 4.6 33.3 1.0
CG C:ASP11 4.7 22.9 1.0
CG C:ASP154 4.8 18.1 1.0
CA C:GLY13 4.9 24.3 1.0
CA C:GLY301 4.9 17.2 1.0
CB C:VAL339 5.0 33.3 1.0
NZ C:LYS18 5.0 33.3 1.0

Magnesium binding site 3 out of 10 in 7p1g

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Magnesium binding site 3 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg401

b:54.4
occ:1.00
 OD1 K:ASP212 1.8 63.6 1.0
NE2 K:HIS291 2.0 53.4 1.0
CG K:ASP212 2.6 63.6 1.0
OD2 K:ASP212 2.9 63.6 1.0
CE1 K:HIS291 3.0 53.4 1.0
CD2 K:HIS291 3.0 53.4 1.0
O2' K:GH3402 3.5 73.2 1.0
O K:GLY82 3.8 62.4 1.0
C3' K:GH3402 3.8 73.2 1.0
CB K:ASP214 3.9 54.0 1.0
CG K:ASP214 4.0 54.0 1.0
CB K:ASP212 4.0 63.6 1.0
ND1 K:HIS291 4.1 53.4 1.0
CG K:HIS291 4.1 53.4 1.0
C2' K:GH3402 4.1 73.2 1.0
OD1 K:ASP214 4.3 54.0 1.0
CA K:ASP214 4.5 54.0 1.0
OD2 K:ASP214 4.5 54.0 1.0
C K:GLY82 4.8 62.4 1.0
N K:ASP214 5.0 54.0 1.0

Magnesium binding site 4 out of 10 in 7p1g

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Magnesium binding site 4 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:20.9
occ:1.00
 O1B A:ADP402 1.9 33.3 1.0
O4 A:PO4403 2.1 35.8 1.0
PB A:ADP402 3.3 33.3 1.0
O1A A:ADP402 3.4 33.3 1.0
P A:PO4403 3.6 35.8 1.0
O3B A:ADP402 3.8 33.3 1.0
O1 A:PO4403 4.0 35.8 1.0
OD2 A:ASP11 4.1 22.9 1.0
OD1 A:ASP154 4.2 18.1 1.0
OE1 A:GLN137 4.2 22.6 1.0
O3A A:ADP402 4.2 33.3 1.0
O2B A:ADP402 4.3 33.3 1.0
CA A:GLY156 4.3 23.4 1.0
NE2 A:GLN137 4.3 22.6 1.0
CD A:GLN137 4.4 22.6 1.0
O2 A:PO4403 4.4 35.8 1.0
O3 A:PO4403 4.5 35.8 1.0
OD2 A:ASP154 4.5 18.1 1.0
OD1 A:ASP11 4.5 22.9 1.0
PA A:ADP402 4.5 33.3 1.0
CG2 A:VAL339 4.6 33.3 1.0
CG A:ASP11 4.7 22.9 1.0
CG A:ASP154 4.8 18.1 1.0
CA A:GLY13 4.9 24.3 1.0
CA A:GLY301 4.9 17.2 1.0
CB A:VAL339 5.0 33.3 1.0
NZ A:LYS18 5.0 33.3 1.0

Magnesium binding site 5 out of 10 in 7p1g

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Magnesium binding site 5 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg401

b:54.4
occ:1.00
 OD1 L:ASP212 1.8 63.6 1.0
NE2 L:HIS291 2.0 53.4 1.0
CG L:ASP212 2.6 63.6 1.0
OD2 L:ASP212 2.9 63.6 1.0
CE1 L:HIS291 3.0 53.4 1.0
CD2 L:HIS291 3.0 53.4 1.0
O2' L:GH3402 3.5 73.2 1.0
O L:GLY82 3.8 62.4 1.0
C3' L:GH3402 3.8 73.2 1.0
CB L:ASP214 3.9 54.0 1.0
CG L:ASP214 4.0 54.0 1.0
CB L:ASP212 4.0 63.6 1.0
ND1 L:HIS291 4.1 53.4 1.0
CG L:HIS291 4.1 53.4 1.0
C2' L:GH3402 4.1 73.2 1.0
OD1 L:ASP214 4.3 54.0 1.0
CA L:ASP214 4.5 54.0 1.0
OD2 L:ASP214 4.5 54.0 1.0
C L:GLY82 4.8 62.4 1.0
N L:ASP214 5.0 54.0 1.0

Magnesium binding site 6 out of 10 in 7p1g

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Magnesium binding site 6 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:20.9
occ:1.00
 O1B B:ADP402 1.9 33.3 1.0
O4 B:PO4403 2.1 35.8 1.0
PB B:ADP402 3.3 33.3 1.0
O1A B:ADP402 3.4 33.3 1.0
P B:PO4403 3.6 35.8 1.0
O3B B:ADP402 3.8 33.3 1.0
O1 B:PO4403 4.0 35.8 1.0
OD2 B:ASP11 4.1 22.9 1.0
OD1 B:ASP154 4.2 18.1 1.0
OE1 B:GLN137 4.2 22.6 1.0
O3A B:ADP402 4.2 33.3 1.0
O2B B:ADP402 4.3 33.3 1.0
CA B:GLY156 4.3 23.4 1.0
NE2 B:GLN137 4.3 22.6 1.0
CD B:GLN137 4.4 22.6 1.0
O2 B:PO4403 4.4 35.8 1.0
O3 B:PO4403 4.5 35.8 1.0
OD2 B:ASP154 4.5 18.1 1.0
OD1 B:ASP11 4.5 22.9 1.0
PA B:ADP402 4.5 33.3 1.0
CG2 B:VAL339 4.6 33.3 1.0
CG B:ASP11 4.7 22.9 1.0
CG B:ASP154 4.8 18.1 1.0
CA B:GLY13 4.9 24.3 1.0
CA B:GLY301 4.9 17.2 1.0
CB B:VAL339 5.0 33.3 1.0
NZ B:LYS18 5.0 33.3 1.0

Magnesium binding site 7 out of 10 in 7p1g

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Magnesium binding site 7 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Mg401

b:54.4
occ:1.00
 OD1 N:ASP212 1.8 63.6 1.0
NE2 N:HIS291 2.0 53.4 1.0
CG N:ASP212 2.6 63.6 1.0
OD2 N:ASP212 2.9 63.6 1.0
CE1 N:HIS291 3.0 53.4 1.0
CD2 N:HIS291 3.0 53.4 1.0
O2' N:GH3402 3.5 73.2 1.0
O N:GLY82 3.8 62.4 1.0
C3' N:GH3402 3.8 73.2 1.0
CB N:ASP214 3.9 54.0 1.0
CG N:ASP214 4.0 54.0 1.0
CB N:ASP212 4.0 63.6 1.0
ND1 N:HIS291 4.1 53.4 1.0
CG N:HIS291 4.1 53.4 1.0
C2' N:GH3402 4.1 73.2 1.0
OD1 N:ASP214 4.3 54.0 1.0
CA N:ASP214 4.5 54.0 1.0
OD2 N:ASP214 4.5 54.0 1.0
C N:GLY82 4.8 62.4 1.0
N N:ASP214 5.0 54.0 1.0

Magnesium binding site 8 out of 10 in 7p1g

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Magnesium binding site 8 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:20.9
occ:1.00
 O1B D:ADP402 1.9 33.3 1.0
O4 D:PO4403 2.1 35.8 1.0
PB D:ADP402 3.3 33.3 1.0
O1A D:ADP402 3.4 33.3 1.0
P D:PO4403 3.6 35.8 1.0
O3B D:ADP402 3.8 33.3 1.0
O1 D:PO4403 4.0 35.8 1.0
OD2 D:ASP11 4.1 22.9 1.0
OD1 D:ASP154 4.2 18.1 1.0
OE1 D:GLN137 4.2 22.6 1.0
O3A D:ADP402 4.2 33.3 1.0
O2B D:ADP402 4.3 33.3 1.0
CA D:GLY156 4.3 23.4 1.0
NE2 D:GLN137 4.3 22.6 1.0
CD D:GLN137 4.4 22.6 1.0
O2 D:PO4403 4.4 35.8 1.0
O3 D:PO4403 4.5 35.8 1.0
OD2 D:ASP154 4.5 18.1 1.0
OD1 D:ASP11 4.5 22.9 1.0
PA D:ADP402 4.5 33.3 1.0
CG2 D:VAL339 4.6 33.3 1.0
CG D:ASP11 4.7 22.9 1.0
CG D:ASP154 4.8 18.1 1.0
CA D:GLY13 4.9 24.3 1.0
CA D:GLY301 4.9 17.2 1.0
CB D:VAL339 5.0 33.3 1.0
NZ D:LYS18 5.0 33.3 1.0

Magnesium binding site 9 out of 10 in 7p1g

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Magnesium binding site 9 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Mg401

b:54.4
occ:1.00
 OD1 O:ASP212 1.8 63.6 1.0
NE2 O:HIS291 2.0 53.4 1.0
CG O:ASP212 2.6 63.6 1.0
OD2 O:ASP212 2.9 63.6 1.0
CE1 O:HIS291 3.0 53.4 1.0
CD2 O:HIS291 3.0 53.4 1.0
O2' O:GH3402 3.5 73.2 1.0
O O:GLY82 3.8 62.4 1.0
C3' O:GH3402 3.8 73.2 1.0
CB O:ASP214 3.9 54.0 1.0
CG O:ASP214 4.0 54.0 1.0
CB O:ASP212 4.0 63.6 1.0
ND1 O:HIS291 4.1 53.4 1.0
CG O:HIS291 4.1 53.4 1.0
C2' O:GH3402 4.1 73.2 1.0
OD1 O:ASP214 4.3 54.0 1.0
CA O:ASP214 4.5 54.0 1.0
OD2 O:ASP214 4.5 54.0 1.0
C O:GLY82 4.8 62.4 1.0
N O:ASP214 5.0 54.0 1.0

Magnesium binding site 10 out of 10 in 7p1g

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Magnesium binding site 10 out of 10 in the Structure of the P. Aeruginosa Exoy-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of the P. Aeruginosa Exoy-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:20.9
occ:1.00
 O1B E:ADP402 1.9 33.3 1.0
O4 E:PO4403 2.1 35.8 1.0
PB E:ADP402 3.3 33.3 1.0
O1A E:ADP402 3.4 33.3 1.0
P E:PO4403 3.6 35.8 1.0
O3B E:ADP402 3.8 33.3 1.0
O1 E:PO4403 4.0 35.8 1.0
OD2 E:ASP11 4.1 22.9 1.0
OD1 E:ASP154 4.2 18.1 1.0
OE1 E:GLN137 4.2 22.6 1.0
O3A E:ADP402 4.2 33.3 1.0
O2B E:ADP402 4.3 33.3 1.0
CA E:GLY156 4.3 23.4 1.0
NE2 E:GLN137 4.3 22.6 1.0
CD E:GLN137 4.4 22.6 1.0
O2 E:PO4403 4.4 35.8 1.0
O3 E:PO4403 4.5 35.8 1.0
OD2 E:ASP154 4.5 18.1 1.0
OD1 E:ASP11 4.5 22.9 1.0
PA E:ADP402 4.5 33.3 1.0
CG2 E:VAL339 4.6 33.3 1.0
CG E:ASP11 4.7 22.9 1.0
CG E:ASP154 4.8 18.1 1.0
CA E:GLY13 4.9 24.3 1.0
CA E:GLY301 4.9 17.2 1.0
CB E:VAL339 5.0 33.3 1.0
NZ E:LYS18 5.0 33.3 1.0

Reference:

A.Belyy, F.Merino, U.Mechold, S.Raunser. Mechanism of Actin-Dependent Activation of Nucleotidyl Cyclase Toxins From Bacterial Human Pathogens To Be Published.
DOI: 10.1038/S41467-021-26889-2
Page generated: Thu Oct 3 03:59:08 2024

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