Magnesium in PDB 7p36: X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type)

Protein crystallography data

The structure of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type), PDB code: 7p36 was solved by D.Bischoff, B.Walla, R.Janowski, D.Niessing, D.Weuster-Botz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.80 / 1.14
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.87, 79.97, 114.59, 90, 90, 90
R / Rfree (%) 9.3 / 10.7

Other elements in 7p36:

The structure of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type) (pdb code 7p36). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type), PDB code: 7p36:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7p36

Go back to Magnesium Binding Sites List in 7p36
Magnesium binding site 1 out of 2 in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:4.5
occ:0.50
O A:HOH570 2.1 7.4 1.0
OXT A:GLN251 2.1 5.5 1.0
O A:HOH416 2.1 9.1 0.5
O A:HOH449 2.1 5.1 0.5
C A:GLN251 3.0 4.5 1.0
O A:GLN251 3.4 4.8 1.0
O A:HOH420 4.3 5.5 0.5
O A:TYR248 4.3 4.8 1.0
O2 A:EDO304 4.4 5.6 0.5
CA A:GLN251 4.4 4.8 1.0
CG1 A:VAL147 4.7 6.4 1.0
O A:THR249 4.7 8.4 1.0
N A:GLN251 4.7 4.9 1.0
CG A:GLN251 4.9 5.8 1.0
O A:HOH448 4.9 7.1 1.0
C A:THR249 5.0 5.7 1.0

Magnesium binding site 2 out of 2 in 7p36

Go back to Magnesium Binding Sites List in 7p36
Magnesium binding site 2 out of 2 in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:13.8
occ:0.80
O A:HOH758 2.0 15.4 1.0
O A:HOH704 2.0 19.8 1.0
O A:HOH646 2.0 22.2 1.0
O A:HOH769 2.0 12.7 1.0
O A:HOH775 2.1 22.5 1.0
O A:HOH437 2.1 13.8 1.0
OE1 A:GLU199 4.0 18.5 1.0
CD A:GLU199 4.9 14.1 1.0

Reference:

D.Bischoff, B.Walla, R.Janowski, D.Niessing, D.Weuster-Botz. X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type) To Be Published.
Page generated: Sat Aug 21 16:47:41 2021

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