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Magnesium in PDB 7p8o: Crystal Structure of D-Aminoacid Transaminase From Haliscomenobacter Hydrossis in Its Intermediate Form

Protein crystallography data

The structure of Crystal Structure of D-Aminoacid Transaminase From Haliscomenobacter Hydrossis in Its Intermediate Form, PDB code: 7p8o was solved by I.O.Matyuta, K.M.Boyko, A.K.Bakunova, A.Y.Nikolaeva, T.V.Rakitina, E.Y.Bezsudnova, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.87 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.636, 72.374, 51.822, 90, 100.05, 90
R / Rfree (%) 19 / 23.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of D-Aminoacid Transaminase From Haliscomenobacter Hydrossis in Its Intermediate Form (pdb code 7p8o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of D-Aminoacid Transaminase From Haliscomenobacter Hydrossis in Its Intermediate Form, PDB code: 7p8o:

Magnesium binding site 1 out of 1 in 7p8o

Go back to Magnesium Binding Sites List in 7p8o
Magnesium binding site 1 out of 1 in the Crystal Structure of D-Aminoacid Transaminase From Haliscomenobacter Hydrossis in Its Intermediate Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of D-Aminoacid Transaminase From Haliscomenobacter Hydrossis in Its Intermediate Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:55.6
occ:1.00
O A:ILE26 2.7 23.6 1.0
ND2 A:ASN146 2.9 35.8 1.0
C A:ILE26 3.8 28.1 1.0
CG A:ASN146 4.0 45.2 1.0
CB A:ASN146 4.3 46.6 1.0
O A:SER25 4.4 26.3 1.0
C A:LEU27 4.5 31.7 1.0
O A:LEU27 4.6 36.5 1.0
CA A:ILE26 4.6 25.4 1.0
N A:LEU27 4.8 24.7 1.0
N A:GLY29 4.8 27.6 1.0
N A:ARG28 4.8 27.5 1.0
CA A:LEU27 4.9 29.7 1.0

Reference:

I.O.Matyuta, K.M.Boyko, A.K.Bakunova, A.Y.Nikolaeva, T.V.Rakitina, E.Y.Bezsudnova, V.O.Popov. Crystal Structure of D-Aminoacid Transaminase From Haliscomenobacter Hydrossis in Its Apo Form To Be Published.
Page generated: Thu Apr 6 18:33:25 2023

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