Magnesium in PDB 7pbo: Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset]

All present enzymatic activity of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset]:
3.6.4.12;

The binding sites of Magnesium atom in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset] (pdb code 7pbo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset], PDB code: 7pbo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:31.0 occ:1.00 O2G B:AGS401 1.8 56.5 1.0 HOG2 B:AGS401 1.9 56.5 1.0 OG1 B:THR66 2.3 38.2 1.0 O2B B:AGS401 2.5 56.5 1.0 HG1 B:THR66 2.7 38.2 1.0 PG B:AGS401 3.3 56.5 1.0 CB B:THR66 3.5 38.2 1.0 HB B:THR66 3.5 38.2 1.0 OD2 B:ASP110 3.7 41.2 1.0 PB B:AGS401 3.8 56.5 1.0 HH22 A:ARG171 3.8 34.4 1.0 O3B B:AGS401 3.9 56.5 1.0 HG21 B:THR66 4.0 38.2 1.0 H B:THR66 4.0 38.2 1.0 O3G B:AGS401 4.1 56.5 1.0 CG2 B:THR66 4.3 38.2 1.0 O2A B:AGS401 4.3 56.5 1.0 OD1 B:ASP110 4.4 41.2 1.0 HH21 A:ARG171 4.4 34.4 1.0 CG B:ASP110 4.4 41.2 1.0 NH2 A:ARG171 4.5 34.4 1.0 O1B B:AGS401 4.5 56.5 1.0 N B:THR66 4.6 38.2 1.0 CA B:THR66 4.6 38.2 1.0 HH22 B:ARG218 4.6 36.1 1.0 S1G B:AGS401 4.7 56.5 1.0 HG23 B:THR66 4.7 38.2 1.0 HA B:THR66 4.8 38.2 1.0 H21 B:AGS401 4.8 56.5 1.0 O3A B:AGS401 4.9 56.5 1.0 HB2 B:LYS65 4.9 34.9 1.0 OE2 B:GLU111 4.9 41.2 1.0 O1A B:AGS401 4.9 56.5 1.0 PA B:AGS401 5.0 56.5 1.0

Magnesium binding site 2 out of 2 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S4 [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:28.9 occ:1.00 OG1 C:THR66 2.0 39.9 1.0 O2G C:AGS401 2.2 56.5 1.0 O2B C:AGS401 2.3 56.5 1.0 HG1 C:THR66 2.4 39.9 1.0 HOG2 C:AGS401 2.4 56.5 1.0 CB C:THR66 3.1 39.9 1.0 HB C:THR66 3.2 39.9 1.0 HG21 C:THR66 3.6 39.9 1.0 PG C:AGS401 3.6 56.5 1.0 PB C:AGS401 3.7 56.5 1.0 OD2 C:ASP110 3.8 45.6 1.0 H C:THR66 3.8 39.9 1.0 CG2 C:THR66 3.9 39.9 1.0 HH22 B:ARG171 4.0 34.2 1.0 O3B C:AGS401 4.1 56.5 1.0 O2A C:AGS401 4.2 56.5 1.0 CA C:THR66 4.3 39.9 1.0 O1B C:AGS401 4.3 56.5 1.0 HG23 C:THR66 4.4 39.9 1.0 N C:THR66 4.4 39.9 1.0 HA C:THR66 4.5 39.9 1.0 OD1 C:ASP110 4.5 45.6 1.0 O3G C:AGS401 4.5 56.5 1.0 CG C:ASP110 4.6 45.6 1.0 HH21 B:ARG171 4.6 34.2 1.0 NH2 B:ARG171 4.6 34.2 1.0 HG22 C:THR66 4.7 39.9 1.0 O3A C:AGS401 4.8 56.5 1.0 OE2 C:GLU111 4.8 44.4 1.0 HB2 C:LYS65 4.9 35.6 1.0 S1G C:AGS401 4.9 56.5 1.0 PA C:AGS401 4.9 56.5 1.0 HH22 C:ARG218 5.0 36.0 1.0 O1A C:AGS401 5.0 56.5 1.0

J.Wald, D.Fahrenkamp, N.Goessweiner-Mohr, W.Lugmayr, L.Ciccarelli, O.Vesper, T.C.Marlovits. Mechanism of Aaa+ Atpase-Mediated Ruvab-Holliday Junction Branch Migration. Nature V. 609 630 2022.
ISSN: ESSN 1476-4687
PubMed: 36002576
DOI: 10.1038/S41586-022-05121-1