Magnesium in PDB 7pbp: Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset]

All present enzymatic activity of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset]:
3.6.4.12;

The binding sites of Magnesium atom in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset] (pdb code 7pbp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset], PDB code: 7pbp:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:41.8 occ:1.00 O2G B:AGS401 1.9 61.8 1.0 OG1 B:THR66 2.0 44.1 1.0 O2B B:AGS401 2.0 61.8 1.0 HOG2 B:AGS401 2.2 61.8 1.0 HG1 B:THR66 2.5 44.1 1.0 HB B:THR66 3.1 44.1 1.0 CB B:THR66 3.1 44.1 1.0 PG B:AGS401 3.3 61.8 1.0 PB B:AGS401 3.4 61.8 1.0 H B:THR66 3.6 44.1 1.0 O3B B:AGS401 3.7 61.8 1.0 HG21 B:THR66 3.7 44.1 1.0 OD2 B:ASP110 3.8 46.1 1.0 HH22 A:ARG171 3.9 40.4 1.0 CG2 B:THR66 4.0 44.1 1.0 O2A B:AGS401 4.1 61.8 1.0 O1B B:AGS401 4.1 61.8 1.0 N B:THR66 4.2 44.1 1.0 CA B:THR66 4.2 44.1 1.0 O3G B:AGS401 4.3 61.8 1.0 O3A B:AGS401 4.5 61.8 1.0 HG23 B:THR66 4.5 44.1 1.0 HA B:THR66 4.5 44.1 1.0 HB2 B:LYS65 4.6 39.9 1.0 S1G B:AGS401 4.6 61.8 1.0 NH2 A:ARG171 4.6 40.4 1.0 HH21 A:ARG171 4.6 40.4 1.0 CG B:ASP110 4.7 46.1 1.0 PA B:AGS401 4.7 61.8 1.0 OD1 B:ASP110 4.7 46.1 1.0 HG22 B:THR66 4.8 44.1 1.0 HH22 B:ARG218 4.8 34.0 1.0 O1A B:AGS401 4.8 61.8 1.0 HE2 B:LYS65 4.8 39.9 1.0

Magnesium binding site 2 out of 3 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:35.3 occ:1.00 O2G C:AGS401 1.9 35.3 1.0 OG1 C:THR66 2.1 42.0 1.0 O2B C:AGS401 2.1 35.3 1.0 HOG2 C:AGS401 2.1 35.3 1.0 HG1 C:THR66 2.6 42.0 1.0 HB C:THR66 3.2 42.0 1.0 CB C:THR66 3.2 42.0 1.0 PG C:AGS401 3.3 35.3 1.0 PB C:AGS401 3.4 35.3 1.0 H C:THR66 3.6 42.0 1.0 O3B C:AGS401 3.8 35.3 1.0 HG21 C:THR66 3.9 42.0 1.0 OD2 C:ASP110 3.9 52.6 1.0 HH22 B:ARG171 4.0 34.7 1.0 O1B C:AGS401 4.0 35.3 1.0 O2A C:AGS401 4.1 35.3 1.0 CG2 C:THR66 4.2 42.0 1.0 N C:THR66 4.2 42.0 1.0 O3G C:AGS401 4.2 35.3 1.0 CA C:THR66 4.3 42.0 1.0 HB2 C:LYS65 4.4 37.6 1.0 HA C:THR66 4.5 42.0 1.0 S1G C:AGS401 4.6 35.3 1.0 OD1 C:ASP110 4.6 52.6 1.0 O3A C:AGS401 4.6 35.3 1.0 HG23 C:THR66 4.6 42.0 1.0 HE2 C:LYS65 4.6 37.6 1.0 O1A C:AGS401 4.7 35.3 1.0 CG C:ASP110 4.7 52.6 1.0 NH2 B:ARG171 4.7 34.7 1.0 HH22 C:ARG218 4.7 42.1 1.0 PA C:AGS401 4.7 35.3 1.0 HH21 B:ARG171 4.7 34.7 1.0 OE2 C:GLU111 4.8 52.6 1.0 HG22 C:THR66 4.9 42.0 1.0

Magnesium binding site 3 out of 3 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S5 [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:67.5 occ:1.00 O2G D:AGS401 1.9 67.3 1.0 O2B D:AGS401 1.9 67.3 1.0 HOG2 D:AGS401 2.4 67.3 1.0 O2A D:AGS401 2.5 67.3 1.0 OG1 D:THR66 2.6 74.2 1.0 PG D:AGS401 3.1 67.3 1.0 PB D:AGS401 3.1 67.3 1.0 HG1 D:THR66 3.1 74.2 1.0 O3B D:AGS401 3.3 67.3 1.0 HB D:THR66 3.4 74.2 1.0 PA D:AGS401 3.5 67.3 1.0 HH22 D:ARG218 3.5 61.3 1.0 CB D:THR66 3.5 74.2 1.0 O1A D:AGS401 3.7 67.3 1.0 O3A D:AGS401 3.8 67.3 1.0 H D:THR66 3.8 74.2 1.0 O3G D:AGS401 3.9 67.3 1.0 HG21 D:THR66 4.1 74.2 1.0 NH2 D:ARG218 4.3 61.3 1.0 HH22 C:ARG171 4.3 60.2 1.0 O1B D:AGS401 4.3 67.3 1.0 HH21 D:ARG21 4.4 76.2 1.0 CG2 D:THR66 4.4 74.2 1.0 N D:THR66 4.5 74.2 1.0 HH21 D:ARG218 4.5 61.3 1.0 S1G D:AGS401 4.6 67.3 1.0 CA D:THR66 4.7 74.2 1.0 HH12 D:ARG218 4.7 61.3 1.0 H21 D:AGS401 4.7 67.3 1.0 HH21 C:ARG171 4.8 60.2 1.0 NH2 C:ARG171 4.8 60.2 1.0 O5' D:AGS401 4.9 67.3 1.0 HG23 D:THR66 4.9 74.2 1.0 H5'2 D:AGS401 5.0 67.3 1.0 HB2 D:LYS65 5.0 71.0 1.0

J.Wald, D.Fahrenkamp, N.Goessweiner-Mohr, W.Lugmayr, L.Ciccarelli, O.Vesper, T.C.Marlovits. Mechanism of Aaa+ Atpase-Mediated Ruvab-Holliday Junction Branch Migration. Nature V. 609 630 2022.
ISSN: ESSN 1476-4687
PubMed: 36002576
DOI: 10.1038/S41586-022-05121-1