Magnesium in PDB 7pbr: Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset]

All present enzymatic activity of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset]:
3.6.4.12;

The binding sites of Magnesium atom in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset] (pdb code 7pbr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset], PDB code: 7pbr:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:43.8 occ:1.00 O2G A:AGS401 1.9 52.3 1.0 O2B A:AGS401 2.0 52.3 1.0 OG1 A:THR66 2.3 40.1 1.0 HOG2 A:AGS401 2.3 52.3 1.0 HG1 A:THR66 2.7 40.1 1.0 PG A:AGS401 3.2 52.3 1.0 HB A:THR66 3.2 40.1 1.0 PB A:AGS401 3.3 52.3 1.0 CB A:THR66 3.3 40.1 1.0 O3B A:AGS401 3.5 52.3 1.0 H A:THR66 3.7 40.1 1.0 HH22 F:ARG171 3.8 53.8 1.0 O2A A:AGS401 3.8 52.3 1.0 HG21 A:THR66 3.9 40.1 1.0 HH21 F:ARG171 3.9 53.8 1.0 OD2 A:ASP110 4.0 47.7 1.0 O3G A:AGS401 4.1 52.3 1.0 O1B A:AGS401 4.2 52.3 1.0 CG2 A:THR66 4.2 40.1 1.0 NH2 F:ARG171 4.2 53.8 1.0 HH22 A:ARG218 4.3 44.7 1.0 O3A A:AGS401 4.3 52.3 1.0 N A:THR66 4.4 40.1 1.0 CA A:THR66 4.4 40.1 1.0 PA A:AGS401 4.5 52.3 1.0 S1G A:AGS401 4.6 52.3 1.0 HG23 A:THR66 4.7 40.1 1.0 OE2 A:GLU111 4.7 47.3 1.0 HA A:THR66 4.7 40.1 1.0 OE1 F:GLU128 4.7 57.3 1.0 O1A A:AGS401 4.8 52.3 1.0 OD1 A:ASP110 4.8 47.7 1.0 HB2 A:LYS65 4.8 34.2 1.0 H21 A:AGS401 4.8 52.3 1.0 CG A:ASP110 4.8 47.7 1.0 HH21 A:ARG218 4.9 44.7 1.0 NH2 A:ARG218 4.9 44.7 1.0 HH22 A:ARG21 4.9 44.8 1.0 HG22 A:THR66 4.9 40.1 1.0

Magnesium binding site 2 out of 4 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:30.2 occ:1.00 O2G B:AGS401 2.0 61.1 1.0 OG1 B:THR66 2.0 43.2 1.0 O2B B:AGS401 2.1 61.1 1.0 HOG2 B:AGS401 2.2 61.1 1.0 HG1 B:THR66 2.4 43.2 1.0 CB B:THR66 3.1 43.2 1.0 HB B:THR66 3.1 43.2 1.0 PG B:AGS401 3.4 61.1 1.0 PB B:AGS401 3.5 61.1 1.0 H B:THR66 3.6 43.2 1.0 HG21 B:THR66 3.7 43.2 1.0 O3B B:AGS401 3.8 61.1 1.0 HH22 A:ARG171 3.8 34.1 1.0 CG2 B:THR66 4.0 43.2 1.0 OD2 B:ASP110 4.0 45.3 1.0 O1B B:AGS401 4.1 61.1 1.0 O2A B:AGS401 4.2 61.1 1.0 CA B:THR66 4.2 43.2 1.0 N B:THR66 4.2 43.2 1.0 O3G B:AGS401 4.3 61.1 1.0 HG23 B:THR66 4.4 43.2 1.0 HA B:THR66 4.5 43.2 1.0 NH2 A:ARG171 4.5 34.1 1.0 HH21 A:ARG171 4.5 34.1 1.0 O3A B:AGS401 4.6 61.1 1.0 OD1 B:ASP110 4.6 45.3 1.0 HB2 B:LYS65 4.7 33.8 1.0 S1G B:AGS401 4.7 61.1 1.0 CG B:ASP110 4.7 45.3 1.0 HG22 B:THR66 4.7 43.2 1.0 OE2 B:GLU111 4.8 43.7 1.0 PA B:AGS401 4.8 61.1 1.0 HH22 B:ARG218 4.9 34.7 1.0 O1A B:AGS401 4.9 61.1 1.0 HE2 B:LYS65 5.0 33.8 1.0

Magnesium binding site 3 out of 4 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:30.9 occ:1.00 O2G C:AGS401 1.9 61.1 1.0 HOG2 C:AGS401 2.0 61.1 1.0 OG1 C:THR66 2.1 45.1 1.0 O2B C:AGS401 2.3 61.1 1.0 HG1 C:THR66 2.5 45.1 1.0 CB C:THR66 3.2 45.1 1.0 HB C:THR66 3.2 45.1 1.0 PG C:AGS401 3.4 61.1 1.0 PB C:AGS401 3.6 61.1 1.0 HG21 C:THR66 3.8 45.1 1.0 H C:THR66 3.8 45.1 1.0 HH22 B:ARG171 3.9 34.1 1.0 OD2 C:ASP110 3.9 48.8 1.0 O3B C:AGS401 4.0 61.1 1.0 CG2 C:THR66 4.0 45.1 1.0 O2A C:AGS401 4.2 61.1 1.0 O3G C:AGS401 4.2 61.1 1.0 O1B C:AGS401 4.2 61.1 1.0 CA C:THR66 4.3 45.1 1.0 N C:THR66 4.4 45.1 1.0 OD1 C:ASP110 4.4 48.8 1.0 HG23 C:THR66 4.5 45.1 1.0 NH2 B:ARG171 4.6 34.1 1.0 HA C:THR66 4.6 45.1 1.0 HH21 B:ARG171 4.6 34.1 1.0 CG C:ASP110 4.6 48.8 1.0 S1G C:AGS401 4.7 61.1 1.0 HB2 C:LYS65 4.7 37.4 1.0 O3A C:AGS401 4.7 61.1 1.0 OE2 C:GLU111 4.8 48.7 1.0 HG22 C:THR66 4.8 45.1 1.0 PA C:AGS401 4.9 61.1 1.0 HE2 C:LYS65 4.9 37.4 1.0 O1A C:AGS401 4.9 61.1 1.0 HH22 C:ARG218 5.0 36.1 1.0

Magnesium binding site 4 out of 4 in the Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ruvab Branch Migration Motor Complexed to the Holliday Junction - Ruvb Aaa+ State S0-A [T2 Dataset] within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:61.5 occ:1.00 O2G D:AGS401 1.9 61.2 1.0 O2B D:AGS401 2.0 61.2 1.0 OG1 D:THR66 2.0 70.0 1.0 HOG2 D:AGS401 2.3 61.2 1.0 HG1 D:THR66 2.4 70.0 1.0 PB D:AGS401 3.1 61.2 1.0 PG D:AGS401 3.2 61.2 1.0 H D:THR66 3.2 70.0 1.0 CB D:THR66 3.2 70.0 1.0 HB D:THR66 3.3 70.0 1.0 OD2 D:ASP110 3.4 96.5 1.0 O1B D:AGS401 3.4 61.2 1.0 O3B D:AGS401 3.6 61.2 1.0 N D:THR66 3.8 70.0 1.0 HB2 D:LYS65 4.0 69.2 1.0 CA D:THR66 4.1 70.0 1.0 S1G D:AGS401 4.1 61.2 1.0 HG21 D:THR66 4.2 70.0 1.0 HA D:THR66 4.3 70.0 1.0 CG2 D:THR66 4.3 70.0 1.0 O2A D:AGS401 4.3 61.2 1.0 CG D:ASP110 4.4 96.5 1.0 O3G D:AGS401 4.4 61.2 1.0 O3A D:AGS401 4.4 61.2 1.0 OD1 D:ASP110 4.6 96.5 1.0 HG23 D:THR66 4.6 70.0 1.0 O1A D:AGS401 4.7 61.2 1.0 HE2 D:LYS65 4.7 69.2 1.0 PA D:AGS401 4.7 61.2 1.0 HZ3 D:LYS65 4.8 69.2 1.0 CB D:LYS65 4.9 69.2 1.0 HZ D:PHE108 5.0 91.4 1.0 C D:LYS65 5.0 69.2 1.0

J.Wald, D.Fahrenkamp, N.Goessweiner-Mohr, W.Lugmayr, L.Ciccarelli, O.Vesper, T.C.Marlovits. Mechanism of Aaa+ Atpase-Mediated Ruvab-Holliday Junction Branch Migration. Nature V. 609 630 2022.
ISSN: ESSN 1476-4687
PubMed: 36002576
DOI: 10.1038/S41586-022-05121-1