Magnesium in PDB 7pdz: Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament

The binding sites of Magnesium atom in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament (pdb code 7pdz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament, PDB code: 7pdz:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg402 b:112.2 occ:1.00 O2B I:ADP401 2.6 108.7 1.0 O1B I:ADP401 2.8 108.7 1.0 O1A I:ADP401 3.2 108.7 1.0 PB I:ADP401 3.2 108.7 1.0 OD2 I:ASP11 4.0 138.6 1.0 OD2 I:ASP154 4.1 124.1 1.0 CA I:GLY13 4.2 117.0 1.0 O3A I:ADP401 4.2 108.7 1.0 NZ I:LYS18 4.3 136.5 1.0 PA I:ADP401 4.3 108.7 1.0 O3B I:ADP401 4.5 108.7 1.0 OD1 I:ASP11 4.5 138.6 1.0 CG I:ASP11 4.7 138.6 1.0 CA I:GLY156 4.8 115.3 1.0 OE1 I:GLN137 4.9 122.1 1.0 CE I:LYS18 5.0 136.5 1.0 OD1 I:ASP154 5.0 124.1 1.0 CG I:ASP154 5.0 124.1 1.0

Magnesium binding site 2 out of 6 in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg402 b:103.3 occ:1.00 O1B J:ADP401 2.2 91.8 1.0 O1A J:ADP401 3.3 91.8 1.0 PB J:ADP401 3.4 91.8 1.0 O3B J:ADP401 3.7 91.8 1.0 CA J:GLY13 4.1 102.0 1.0 OD2 J:ASP11 4.1 116.8 1.0 NZ J:LYS18 4.3 111.4 1.0 O3A J:ADP401 4.4 91.8 1.0 PA J:ADP401 4.5 91.8 1.0 OD1 J:ASP11 4.5 116.8 1.0 O2B J:ADP401 4.5 91.8 1.0 OD2 J:ASP154 4.5 95.9 1.0 CA J:GLY156 4.5 98.4 1.0 OE1 J:GLN137 4.6 104.4 1.0 CG J:ASP11 4.7 116.8 1.0 CD J:GLN137 4.8 104.4 1.0 NE2 J:GLN137 4.9 104.4 1.0 N J:SER14 4.9 95.2 1.0 CG2 J:VAL339 5.0 102.9 1.0 N J:GLY13 5.0 102.0 1.0

Magnesium binding site 3 out of 6 in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg403 b:97.8 occ:1.00 O1B K:ADP402 2.1 84.7 1.0 O3 K:PO4401 2.2 106.8 1.0 NE2 K:GLN137 2.4 90.9 1.0 O2 K:PO4401 2.9 106.8 1.0 P K:PO4401 3.0 106.8 1.0 O2B K:ADP402 3.1 84.7 1.0 PB K:ADP402 3.1 84.7 1.0 CD K:GLN137 3.4 90.9 1.0 O1 K:PO4401 3.7 106.8 1.0 OE1 K:GLN137 3.7 90.9 1.0 OD1 K:ASP11 4.0 102.6 1.0 O3A K:ADP402 4.2 84.7 1.0 O3B K:ADP402 4.3 84.7 1.0 CA K:GLY13 4.3 92.1 1.0 O4 K:PO4401 4.3 106.8 1.0 OD2 K:ASP154 4.4 89.5 1.0 O1A K:ADP402 4.5 84.7 1.0 NZ K:LYS18 4.5 104.5 1.0 OD2 K:ASP11 4.6 102.6 1.0 CA K:GLY156 4.7 85.1 1.0 CG K:ASP11 4.7 102.6 1.0 CG K:GLN137 4.8 90.9 1.0

Magnesium binding site 4 out of 6 in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg402 b:97.2 occ:1.00 O3 L:PO4403 2.0 101.2 1.0 O1B L:ADP401 2.4 85.1 1.0 P L:PO4403 3.2 101.2 1.0 O2 L:PO4403 3.3 101.2 1.0 O3B L:ADP401 3.4 85.1 1.0 PB L:ADP401 3.4 85.1 1.0 O1A L:ADP401 3.5 85.1 1.0 OD1 L:ASP11 4.1 99.5 1.0 O4 L:PO4403 4.2 101.2 1.0 O1 L:PO4403 4.2 101.2 1.0 CA L:GLY13 4.3 88.7 1.0 OD2 L:ASP11 4.5 99.5 1.0 O2B L:ADP401 4.5 85.1 1.0 O3A L:ADP401 4.5 85.1 1.0 OD2 L:ASP154 4.6 91.5 1.0 NZ L:LYS18 4.6 97.0 1.0 PA L:ADP401 4.7 85.1 1.0 OE1 L:GLN137 4.7 91.7 1.0 CG L:ASP11 4.7 99.5 1.0 N L:GLY156 4.9 89.8 1.0 CD L:GLN137 4.9 91.7 1.0 CA L:GLY156 4.9 89.8 1.0

Magnesium binding site 5 out of 6 in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg402 b:92.8 occ:1.00 O4 N:PO4403 1.9 102.7 1.0 O1B N:ADP401 1.9 86.8 1.0 O2 N:PO4403 2.0 102.7 1.0 P N:PO4403 2.4 102.7 1.0 PB N:ADP401 3.0 86.8 1.0 O3B N:ADP401 3.4 86.8 1.0 NE2 N:GLN137 3.4 86.7 1.0 O1 N:PO4403 3.4 102.7 1.0 O3 N:PO4403 3.5 102.7 1.0 O2B N:ADP401 3.8 86.8 1.0 CA N:GLY13 3.8 90.1 1.0 O1A N:ADP401 3.8 86.8 1.0 OD1 N:ASP11 4.2 93.2 1.0 CD N:GLN137 4.3 86.7 1.0 O3A N:ADP401 4.3 86.8 1.0 N N:SER14 4.4 88.7 1.0 NZ N:LYS18 4.6 91.8 1.0 OE1 N:GLN137 4.6 86.7 1.0 C N:GLY13 4.6 90.1 1.0 OD2 N:ASP154 4.6 85.6 1.0 PA N:ADP401 4.7 86.8 1.0 OD2 N:ASP11 4.7 93.2 1.0 CA N:GLY156 4.8 84.6 1.0 CG N:ASP11 4.9 93.2 1.0 N N:GLY13 4.9 90.1 1.0

Magnesium binding site 6 out of 6 in the Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Capping Protein Bound to the Barbed End of A Cytoplasmic Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg402 b:93.9 occ:1.00 O2 O:PO4403 2.0 100.7 1.0 O1B O:ADP401 2.0 85.2 1.0 PB O:ADP401 2.7 85.2 1.0 O3B O:ADP401 2.7 85.2 1.0 OE1 O:GLN137 2.8 89.7 1.0 P O:PO4403 3.2 100.7 1.0 O4 O:PO4403 3.4 100.7 1.0 O2B O:ADP401 3.5 85.2 1.0 CD O:GLN137 3.8 89.7 1.0 CA O:GLY13 3.9 88.3 1.0 O3 O:PO4403 4.0 100.7 1.0 OD1 O:ASP11 4.1 92.5 1.0 O3A O:ADP401 4.1 85.2 1.0 CA O:GLY156 4.2 86.3 1.0 NE2 O:GLN137 4.2 89.7 1.0 NZ O:LYS18 4.2 92.5 1.0 OD2 O:ASP11 4.2 92.5 1.0 O1 O:PO4403 4.2 100.7 1.0 N O:GLY156 4.4 86.3 1.0 CG O:ASP11 4.6 92.5 1.0 N O:SER14 4.8 84.4 1.0 O1A O:ADP401 4.8 85.2 1.0 C O:GLY13 4.9 88.3 1.0 N O:GLY13 4.9 88.3 1.0

J.Funk, F.Merino, M.Schacks, K.Rottner, S.Raunser, P.Bieling. A Barbed End Interference Mechanism Reveals How Capping Protein Promotes Nucleation in Branched Actin Networks To Be Published.