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Magnesium in PDB 7pe4: Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose

Enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose

All present enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose:
2.4.1.266;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose, PDB code: 7pe4 was solved by A.Silva, P.J.Babosa Pereira, S.Macedo-Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.58 / 2.05
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 101.887, 101.887, 122.098, 90, 90, 90
R / Rfree (%) 16 / 19.2

Other elements in 7pe4:

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose (pdb code 7pe4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose, PDB code: 7pe4:

Magnesium binding site 1 out of 1 in 7pe4

Go back to Magnesium Binding Sites List in 7pe4
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:55.2
occ:1.00
 O A:HOH662 2.2 67.8 1.0
O1B A:UPG401 2.3 53.5 1.0
OD2 A:ASP133 2.3 46.7 1.0
O A:HOH565 2.3 38.1 1.0
O2A A:UPG401 2.3 52.0 1.0
CG A:ASP133 3.2 38.5 1.0
PB A:UPG401 3.3 55.7 1.0
OD1 A:ASP133 3.5 39.0 1.0
PA A:UPG401 3.5 48.2 1.0
O3A A:UPG401 3.5 51.6 1.0
O2' A:UPG401 3.8 48.8 1.0
O2B A:UPG401 3.9 49.2 1.0
O A:HOH656 4.1 65.6 1.0
O A:HOH637 4.1 55.9 1.0
C5C A:UPG401 4.3 35.2 1.0
O A:HOH632 4.4 47.0 1.0
O5C A:UPG401 4.4 42.6 1.0
CB A:ASP133 4.5 36.5 1.0
OD2 A:ASP131 4.6 34.0 1.0
O1A A:UPG401 4.6 44.8 1.0
NH2 A:ARG250 4.7 90.7 1.0
O3B A:UPG401 4.7 49.1 1.0
O A:HOH506 4.8 63.8 1.0
C2' A:UPG401 5.0 48.2 1.0

Reference:

A.Silva, D.Nunes-Costa, N.Empadinhas, P.J.Babosa Pereira, S.Macedo-Ribeiro. Crystal Structure of Mycobacterium Hassiacum Glucosyl-3-Phosphoglycerate Synthase at pH 5.5 in Complex with Udp-Glucose To Be Published.
Page generated: Thu Oct 3 04:09:26 2024

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