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Magnesium in PDB 7pef: Crystal Structure of Ipgc in Complex with Dmso

Protein crystallography data

The structure of Crystal Structure of Ipgc in Complex with Dmso, PDB code: 7pef was solved by M.Gardonyi, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.52 / 1.54
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 57.477, 57.477, 159.515, 90, 90, 120
R / Rfree (%) 16.1 / 18.4

Other elements in 7pef:

The structure of Crystal Structure of Ipgc in Complex with Dmso also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ipgc in Complex with Dmso (pdb code 7pef). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ipgc in Complex with Dmso, PDB code: 7pef:

Magnesium binding site 1 out of 1 in 7pef

Go back to Magnesium Binding Sites List in 7pef
Magnesium binding site 1 out of 1 in the Crystal Structure of Ipgc in Complex with Dmso


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ipgc in Complex with Dmso within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:29.2
occ:1.00
O B:HOH363 1.9 27.2 1.0
O B:HOH323 2.1 29.6 1.0
O B:HOH362 2.2 27.6 1.0
O B:HOH318 2.2 26.6 1.0
O B:HOH345 2.3 29.4 1.0
HZ1 B:LYS140 3.5 24.7 1.0
HZ2 B:LYS140 3.5 25.2 1.0
NZ B:LYS140 3.9 24.6 1.0
O B:SER134 4.0 24.9 1.0
O B:HOH306 4.1 26.4 1.0
O B:GLN132 4.2 26.6 1.0
OD1 B:ASN135 4.2 27.7 1.0
HE3 B:LYS140 4.4 24.1 1.0
O B:HOH377 4.5 35.9 1.0
O B:ILE131 4.6 25.1 1.0
HZ3 B:LYS140 4.7 24.8 1.0
CE B:LYS140 4.7 23.9 1.0
HA B:ASN135 4.8 25.1 1.0
HD2 B:LYS140 4.8 23.5 1.0
C B:GLN132 4.9 25.6 1.0

Reference:

M.Gardonyi, A.Heine, G.Klebe. Crystal Structure of Ipgc in Complex with Dmso To Be Published.
Page generated: Thu Oct 3 04:09:30 2024

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