Atomistry » Magnesium » PDB 7pbo-7ply » 7pf1
Atomistry »
  Magnesium »
    PDB 7pbo-7ply »
      7pf1 »

Magnesium in PDB 7pf1: Uvc Treated Human Apoferritin

Other elements in 7pf1:

The structure of Uvc Treated Human Apoferritin also contains other interesting chemical elements:

Chlorine (Cl) 96 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 167;

Binding sites:

The binding sites of Magnesium atom in the Uvc Treated Human Apoferritin (pdb code 7pf1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 167 binding sites of Magnesium where determined in the Uvc Treated Human Apoferritin, PDB code: 7pf1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 1 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg205

b:20.1
occ:1.00
 O J:HOH549 1.9 30.6 1.0
O A:HOH587 2.0 23.7 1.0
O J:HOH385 2.0 16.5 1.0
O A:HOH340 2.1 23.7 1.0
O J:HOH444 2.1 20.5 1.0
O A:HOH374 2.3 20.1 1.0
OD2 A:ASP134 4.0 25.2 1.0
O J:THR138 4.2 21.5 1.0
O A:HOH583 4.3 50.9 1.0
CG2 A:THR138 4.4 24.1 1.0
O J:HOH490 4.4 23.6 1.0
OD1 A:ASP134 4.5 24.6 1.0
OG1 A:THR138 4.5 24.0 1.0
CA J:THR138 4.6 16.6 1.0
CG A:ASP134 4.7 18.6 1.0
O A:HOH504 4.7 34.1 1.0
O J:GLU137 4.8 20.3 1.0
C J:THR138 4.8 18.9 1.0
CB A:THR138 5.0 20.1 1.0
O J:HOH471 5.0 14.0 1.0

Magnesium binding site 2 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 2 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg206

b:24.0
occ:1.00
 SG A:CYS105 2.0 16.3 1.0
O A:HOH547 2.2 35.8 1.0
CB A:CYS105 3.0 15.1 1.0
O A:HOH454 3.3 39.6 1.0
CA A:CYS105 3.6 15.8 1.0
O A:HOH542 3.7 27.4 1.0
O A:HOH418 4.2 29.8 1.0
N A:CYS105 4.4 14.1 1.0
O A:HOH316 4.4 40.0 1.0
CZ3 A:TRP96 4.5 19.8 1.0
SG A:CYS93 4.7 19.2 1.0
C A:CYS105 4.8 14.9 1.0
O A:CYS105 5.0 16.1 1.0

Magnesium binding site 3 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 3 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg207

b:56.3
occ:1.00
 O T:HOH554 2.1 41.8 1.0
OD1 A:ASP45 2.4 17.0 1.0
O A:HOH373 2.7 22.9 1.0
O A:HOH389 3.1 30.1 1.0
NZ T:LYS149 3.4 14.6 1.0
CG A:ASP45 3.6 16.0 1.0
O T:HOH334 3.8 38.5 1.0
O T:HOH396 3.9 24.8 1.0
OD2 T:ASP153 3.9 14.4 1.0
O A:HOH393 3.9 19.1 1.0
O A:ASP45 4.1 13.5 1.0
O A:HOH343 4.3 13.9 1.0
O A:HOH563 4.3 51.6 1.0
OD2 A:ASP45 4.4 15.2 1.0
CB A:ASP45 4.5 14.5 1.0
CA A:ASP45 4.6 14.3 1.0
CE T:LYS149 4.6 13.9 1.0
C A:ASP45 4.8 14.4 1.0
CG T:ASP153 4.9 15.3 1.0

Magnesium binding site 4 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 4 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg208

b:25.9
occ:1.00
 O A:HOH341 1.8 21.4 1.0
OE1 A:GLU64 2.0 22.4 1.0
OE1 A:GLN61 2.2 38.9 1.0
O A:HOH399 2.4 33.5 1.0
O A:HOH349 2.5 21.9 1.0
CD A:GLU64 3.3 21.6 1.0
CD A:GLN61 3.3 28.3 1.0
O A:HOH434 3.5 53.0 1.0
O A:HOH380 3.5 49.0 1.0
NE2 A:GLN61 4.0 36.5 1.0
OE2 A:GLU64 4.1 25.0 1.0
CB A:GLU64 4.2 18.5 1.0
CG A:GLU64 4.3 20.3 1.0
O A:HOH301 4.4 29.3 1.0
O A:HOH449 4.4 40.3 1.0
OE2 A:GLU110 4.4 37.8 1.0
OE2 A:GLU65 4.5 32.5 1.0
CG A:GLN61 4.5 23.1 1.0
CB A:ALA147 4.5 16.5 1.0
O A:HOH464 4.6 33.5 1.0
CA A:GLN61 4.6 16.4 1.0
OE1 A:GLU143 4.6 35.8 1.0
CB A:GLN61 4.7 18.4 1.0
CD A:GLU143 4.7 31.6 1.0
O A:GLN61 4.9 17.2 1.0
OE2 A:GLU143 4.9 37.2 1.0
CE1 A:HIS68 5.0 35.1 1.0

Magnesium binding site 5 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 5 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg209

b:19.2
occ:1.00
 OE1 A:GLU30 1.9 19.3 1.0
OE1 A:GLU65 2.0 24.4 1.0
O A:HOH330 2.1 14.1 1.0
ND1 A:HIS68 2.1 28.3 1.0
O A:HOH322 2.2 23.4 1.0
O A:HOH303 2.3 57.2 1.0
CE1 A:HIS68 3.0 35.1 1.0
CD A:GLU30 3.0 16.9 1.0
CD A:GLU65 3.0 26.9 1.0
CG A:HIS68 3.3 25.7 1.0
OE2 A:GLU30 3.3 19.8 1.0
OE2 A:GLU65 3.4 32.5 1.0
CB A:HIS68 3.7 18.6 1.0
O A:HOH394 4.1 30.5 1.0
OE1 A:GLN144 4.1 26.4 1.0
NE2 A:HIS68 4.2 38.0 1.0
CG A:GLU30 4.3 15.5 1.0
CG1 A:VAL113 4.3 18.4 1.0
CD2 A:HIS68 4.3 31.5 1.0
O A:HOH312 4.3 57.0 1.0
CG A:GLU65 4.4 20.2 1.0
CA A:GLU65 4.6 15.2 1.0
CB A:GLU30 4.7 14.9 1.0
CB A:GLU65 4.7 17.0 1.0
O A:HOH434 4.7 53.0 1.0
CA A:GLU30 4.9 14.3 1.0
CD A:GLN144 4.9 20.6 1.0
OE1 A:GLU110 4.9 31.7 1.0

Magnesium binding site 6 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 6 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg210

b:51.7
occ:1.00
 O A:HOH315 1.9 29.2 1.0
O A:HOH540 2.1 37.2 1.0
O A:HOH375 2.1 18.2 1.0
O A:HOH521 2.4 37.5 1.0
O A:HOH598 2.4 42.7 1.0
O A:HOH604 2.5 48.2 1.0
OD1 A:ASN28 4.1 13.8 1.0
O A:ARG25 4.3 13.2 1.0
O A:HOH537 4.3 29.1 1.0
O A:HOH600 4.3 49.7 1.0
O A:HOH567 4.4 19.0 1.0
O A:HOH348 4.6 25.9 1.0
O A:HOH582 4.7 9.8 1.0
CB A:LEU29 4.7 13.5 1.0
CB A:ASN28 4.8 13.5 1.0
CG A:ASN28 4.8 14.2 1.0
N A:LEU29 4.8 12.7 1.0
O A:HOH565 5.0 44.2 1.0
CD1 A:LEU29 5.0 16.9 1.0
CA A:LEU29 5.0 13.2 1.0

Magnesium binding site 7 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 7 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg212

b:56.3
occ:1.00
 O A:HOH556 2.1 41.8 1.0
OD1 O:ASP45 2.4 17.0 1.0
O O:HOH373 2.7 22.9 1.0
O O:HOH389 3.1 30.1 1.0
NZ A:LYS149 3.4 14.6 1.0
CG O:ASP45 3.6 16.0 1.0
O A:HOH334 3.8 38.5 1.0
O A:HOH397 3.9 24.8 1.0
OD2 A:ASP153 3.9 14.4 1.0
O O:HOH393 3.9 19.1 1.0
O O:ASP45 4.1 13.5 1.0
O O:HOH343 4.3 13.9 1.0
O O:HOH563 4.3 51.6 1.0
OD2 O:ASP45 4.4 15.2 1.0
CB O:ASP45 4.5 14.5 1.0
CA O:ASP45 4.6 14.3 1.0
CE A:LYS149 4.6 13.9 1.0
C O:ASP45 4.8 14.4 1.0
CG A:ASP153 4.9 15.3 1.0

Magnesium binding site 8 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 8 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg213

b:19.2
occ:1.00
 O A:HOH317 2.0 17.2 1.0
O W:HOH593 2.1 18.3 1.0
O W:HOH530 2.2 20.0 1.0
O A:HOH308 2.2 18.4 1.0
O W:HOH362 4.1 16.6 1.0
OD2 A:ASP87 4.1 15.0 1.0
OD1 A:ASP87 4.1 14.4 1.0
O W:HOH448 4.4 49.7 1.0
CG A:ASP87 4.5 15.4 1.0
O W:HOH591 4.5 23.6 1.0
NZ W:LYS89 4.7 13.9 1.0
CL A:CL204 4.7 26.5 1.0
O W:HOH524 4.8 34.7 1.0
CE W:LYS90 4.8 29.6 1.0

Magnesium binding site 9 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 9 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg205

b:20.1
occ:1.00
 O R:HOH545 1.9 30.6 1.0
O B:HOH585 2.0 23.7 1.0
O R:HOH386 2.0 16.5 1.0
O B:HOH340 2.1 23.7 1.0
O R:HOH444 2.1 20.5 1.0
O B:HOH374 2.3 20.1 1.0
OD2 B:ASP134 4.0 25.2 1.0
O R:THR138 4.2 21.5 1.0
O B:HOH580 4.3 50.9 1.0
CG2 B:THR138 4.4 24.1 1.0
O R:HOH488 4.4 23.6 1.0
OD1 B:ASP134 4.5 24.6 1.0
OG1 B:THR138 4.5 24.0 1.0
CA R:THR138 4.6 16.6 1.0
CG B:ASP134 4.7 18.6 1.0
O B:HOH505 4.7 34.1 1.0
O R:GLU137 4.8 20.3 1.0
C R:THR138 4.8 18.9 1.0
O R:HOH469 5.0 14.0 1.0
CB B:THR138 5.0 20.1 1.0

Magnesium binding site 10 out of 167 in 7pf1

Go back to Magnesium Binding Sites List in 7pf1
Magnesium binding site 10 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg206

b:24.0
occ:1.00
 SG B:CYS105 2.0 16.3 1.0
O B:HOH546 2.2 35.8 1.0
CB B:CYS105 3.0 15.1 1.0
O B:HOH454 3.3 39.6 1.0
CA B:CYS105 3.6 15.8 1.0
O B:HOH541 3.7 27.4 1.0
O B:HOH419 4.2 29.8 1.0
N B:CYS105 4.4 14.1 1.0
O B:HOH316 4.4 40.0 1.0
CZ3 B:TRP96 4.5 19.8 1.0
SG B:CYS93 4.7 19.2 1.0
C B:CYS105 4.8 14.9 1.0
O B:CYS105 5.0 16.1 1.0

Reference:

J.S.Depelteau, L.Renault, N.Althof, C.K.Cassidy, L.M.Mendonca, G.J.Jensen, G.P.Resch, A.Briegel. Uvc Inactivation of Pathogenic Samples Suitable For Cryo-Em Analysis. Commun Biol V. 5 29 2022.
ISSN: ESSN 2399-3642
PubMed: 35017666
DOI: 10.1038/S42003-021-02962-W
Page generated: Thu Oct 3 04:09:55 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy