Magnesium in PDB 7pf1: Uvc Treated Human Apoferritin

Other elements in 7pf1:

The structure of Uvc Treated Human Apoferritin also contains other interesting chemical elements:

Chlorine (Cl) 96 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 167;

Binding sites:

The binding sites of Magnesium atom in the Uvc Treated Human Apoferritin (pdb code 7pf1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 167 binding sites of Magnesium where determined in the Uvc Treated Human Apoferritin, PDB code: 7pf1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 167 in 7pf1

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Magnesium binding site 1 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg205

b:20.1
occ:1.00
 O J:HOH549 1.9 30.6 1.0
O A:HOH587 2.0 23.7 1.0
O J:HOH385 2.0 16.5 1.0
O A:HOH340 2.1 23.7 1.0
O J:HOH444 2.1 20.5 1.0
O A:HOH374 2.3 20.1 1.0
OD2 A:ASP134 4.0 25.2 1.0
O J:THR138 4.2 21.5 1.0
O A:HOH583 4.3 50.9 1.0
CG2 A:THR138 4.4 24.1 1.0
O J:HOH490 4.4 23.6 1.0
OD1 A:ASP134 4.5 24.6 1.0
OG1 A:THR138 4.5 24.0 1.0
CA J:THR138 4.6 16.6 1.0
CG A:ASP134 4.7 18.6 1.0
O A:HOH504 4.7 34.1 1.0
O J:GLU137 4.8 20.3 1.0
C J:THR138 4.8 18.9 1.0
CB A:THR138 5.0 20.1 1.0
O J:HOH471 5.0 14.0 1.0

Magnesium binding site 2 out of 167 in 7pf1

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Magnesium binding site 2 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg206

b:24.0
occ:1.00
 SG A:CYS105 2.0 16.3 1.0
O A:HOH547 2.2 35.8 1.0
CB A:CYS105 3.0 15.1 1.0
O A:HOH454 3.3 39.6 1.0
CA A:CYS105 3.6 15.8 1.0
O A:HOH542 3.7 27.4 1.0
O A:HOH418 4.2 29.8 1.0
N A:CYS105 4.4 14.1 1.0
O A:HOH316 4.4 40.0 1.0
CZ3 A:TRP96 4.5 19.8 1.0
SG A:CYS93 4.7 19.2 1.0
C A:CYS105 4.8 14.9 1.0
O A:CYS105 5.0 16.1 1.0

Magnesium binding site 3 out of 167 in 7pf1

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Magnesium binding site 3 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg207

b:56.3
occ:1.00
 O T:HOH554 2.1 41.8 1.0
OD1 A:ASP45 2.4 17.0 1.0
O A:HOH373 2.7 22.9 1.0
O A:HOH389 3.1 30.1 1.0
NZ T:LYS149 3.4 14.6 1.0
CG A:ASP45 3.6 16.0 1.0
O T:HOH334 3.8 38.5 1.0
O T:HOH396 3.9 24.8 1.0
OD2 T:ASP153 3.9 14.4 1.0
O A:HOH393 3.9 19.1 1.0
O A:ASP45 4.1 13.5 1.0
O A:HOH343 4.3 13.9 1.0
O A:HOH563 4.3 51.6 1.0
OD2 A:ASP45 4.4 15.2 1.0
CB A:ASP45 4.5 14.5 1.0
CA A:ASP45 4.6 14.3 1.0
CE T:LYS149 4.6 13.9 1.0
C A:ASP45 4.8 14.4 1.0
CG T:ASP153 4.9 15.3 1.0

Magnesium binding site 4 out of 167 in 7pf1

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Magnesium binding site 4 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg208

b:25.9
occ:1.00
 O A:HOH341 1.8 21.4 1.0
OE1 A:GLU64 2.0 22.4 1.0
OE1 A:GLN61 2.2 38.9 1.0
O A:HOH399 2.4 33.5 1.0
O A:HOH349 2.5 21.9 1.0
CD A:GLU64 3.3 21.6 1.0
CD A:GLN61 3.3 28.3 1.0
O A:HOH434 3.5 53.0 1.0
O A:HOH380 3.5 49.0 1.0
NE2 A:GLN61 4.0 36.5 1.0
OE2 A:GLU64 4.1 25.0 1.0
CB A:GLU64 4.2 18.5 1.0
CG A:GLU64 4.3 20.3 1.0
O A:HOH301 4.4 29.3 1.0
O A:HOH449 4.4 40.3 1.0
OE2 A:GLU110 4.4 37.8 1.0
OE2 A:GLU65 4.5 32.5 1.0
CG A:GLN61 4.5 23.1 1.0
CB A:ALA147 4.5 16.5 1.0
O A:HOH464 4.6 33.5 1.0
CA A:GLN61 4.6 16.4 1.0
OE1 A:GLU143 4.6 35.8 1.0
CB A:GLN61 4.7 18.4 1.0
CD A:GLU143 4.7 31.6 1.0
O A:GLN61 4.9 17.2 1.0
OE2 A:GLU143 4.9 37.2 1.0
CE1 A:HIS68 5.0 35.1 1.0

Magnesium binding site 5 out of 167 in 7pf1

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Magnesium binding site 5 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg209

b:19.2
occ:1.00
 OE1 A:GLU30 1.9 19.3 1.0
OE1 A:GLU65 2.0 24.4 1.0
O A:HOH330 2.1 14.1 1.0
ND1 A:HIS68 2.1 28.3 1.0
O A:HOH322 2.2 23.4 1.0
O A:HOH303 2.3 57.2 1.0
CE1 A:HIS68 3.0 35.1 1.0
CD A:GLU30 3.0 16.9 1.0
CD A:GLU65 3.0 26.9 1.0
CG A:HIS68 3.3 25.7 1.0
OE2 A:GLU30 3.3 19.8 1.0
OE2 A:GLU65 3.4 32.5 1.0
CB A:HIS68 3.7 18.6 1.0
O A:HOH394 4.1 30.5 1.0
OE1 A:GLN144 4.1 26.4 1.0
NE2 A:HIS68 4.2 38.0 1.0
CG A:GLU30 4.3 15.5 1.0
CG1 A:VAL113 4.3 18.4 1.0
CD2 A:HIS68 4.3 31.5 1.0
O A:HOH312 4.3 57.0 1.0
CG A:GLU65 4.4 20.2 1.0
CA A:GLU65 4.6 15.2 1.0
CB A:GLU30 4.7 14.9 1.0
CB A:GLU65 4.7 17.0 1.0
O A:HOH434 4.7 53.0 1.0
CA A:GLU30 4.9 14.3 1.0
CD A:GLN144 4.9 20.6 1.0
OE1 A:GLU110 4.9 31.7 1.0

Magnesium binding site 6 out of 167 in 7pf1

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Magnesium binding site 6 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg210

b:51.7
occ:1.00
 O A:HOH315 1.9 29.2 1.0
O A:HOH540 2.1 37.2 1.0
O A:HOH375 2.1 18.2 1.0
O A:HOH521 2.4 37.5 1.0
O A:HOH598 2.4 42.7 1.0
O A:HOH604 2.5 48.2 1.0
OD1 A:ASN28 4.1 13.8 1.0
O A:ARG25 4.3 13.2 1.0
O A:HOH537 4.3 29.1 1.0
O A:HOH600 4.3 49.7 1.0
O A:HOH567 4.4 19.0 1.0
O A:HOH348 4.6 25.9 1.0
O A:HOH582 4.7 9.8 1.0
CB A:LEU29 4.7 13.5 1.0
CB A:ASN28 4.8 13.5 1.0
CG A:ASN28 4.8 14.2 1.0
N A:LEU29 4.8 12.7 1.0
O A:HOH565 5.0 44.2 1.0
CD1 A:LEU29 5.0 16.9 1.0
CA A:LEU29 5.0 13.2 1.0

Magnesium binding site 7 out of 167 in 7pf1

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Magnesium binding site 7 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg212

b:56.3
occ:1.00
 O A:HOH556 2.1 41.8 1.0
OD1 O:ASP45 2.4 17.0 1.0
O O:HOH373 2.7 22.9 1.0
O O:HOH389 3.1 30.1 1.0
NZ A:LYS149 3.4 14.6 1.0
CG O:ASP45 3.6 16.0 1.0
O A:HOH334 3.8 38.5 1.0
O A:HOH397 3.9 24.8 1.0
OD2 A:ASP153 3.9 14.4 1.0
O O:HOH393 3.9 19.1 1.0
O O:ASP45 4.1 13.5 1.0
O O:HOH343 4.3 13.9 1.0
O O:HOH563 4.3 51.6 1.0
OD2 O:ASP45 4.4 15.2 1.0
CB O:ASP45 4.5 14.5 1.0
CA O:ASP45 4.6 14.3 1.0
CE A:LYS149 4.6 13.9 1.0
C O:ASP45 4.8 14.4 1.0
CG A:ASP153 4.9 15.3 1.0

Magnesium binding site 8 out of 167 in 7pf1

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Magnesium binding site 8 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg213

b:19.2
occ:1.00
 O A:HOH317 2.0 17.2 1.0
O W:HOH593 2.1 18.3 1.0
O W:HOH530 2.2 20.0 1.0
O A:HOH308 2.2 18.4 1.0
O W:HOH362 4.1 16.6 1.0
OD2 A:ASP87 4.1 15.0 1.0
OD1 A:ASP87 4.1 14.4 1.0
O W:HOH448 4.4 49.7 1.0
CG A:ASP87 4.5 15.4 1.0
O W:HOH591 4.5 23.6 1.0
NZ W:LYS89 4.7 13.9 1.0
CL A:CL204 4.7 26.5 1.0
O W:HOH524 4.8 34.7 1.0
CE W:LYS90 4.8 29.6 1.0

Magnesium binding site 9 out of 167 in 7pf1

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Magnesium binding site 9 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg205

b:20.1
occ:1.00
 O R:HOH545 1.9 30.6 1.0
O B:HOH585 2.0 23.7 1.0
O R:HOH386 2.0 16.5 1.0
O B:HOH340 2.1 23.7 1.0
O R:HOH444 2.1 20.5 1.0
O B:HOH374 2.3 20.1 1.0
OD2 B:ASP134 4.0 25.2 1.0
O R:THR138 4.2 21.5 1.0
O B:HOH580 4.3 50.9 1.0
CG2 B:THR138 4.4 24.1 1.0
O R:HOH488 4.4 23.6 1.0
OD1 B:ASP134 4.5 24.6 1.0
OG1 B:THR138 4.5 24.0 1.0
CA R:THR138 4.6 16.6 1.0
CG B:ASP134 4.7 18.6 1.0
O B:HOH505 4.7 34.1 1.0
O R:GLU137 4.8 20.3 1.0
C R:THR138 4.8 18.9 1.0
O R:HOH469 5.0 14.0 1.0
CB B:THR138 5.0 20.1 1.0

Magnesium binding site 10 out of 167 in 7pf1

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Magnesium binding site 10 out of 167 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg206

b:24.0
occ:1.00
 SG B:CYS105 2.0 16.3 1.0
O B:HOH546 2.2 35.8 1.0
CB B:CYS105 3.0 15.1 1.0
O B:HOH454 3.3 39.6 1.0
CA B:CYS105 3.6 15.8 1.0
O B:HOH541 3.7 27.4 1.0
O B:HOH419 4.2 29.8 1.0
N B:CYS105 4.4 14.1 1.0
O B:HOH316 4.4 40.0 1.0
CZ3 B:TRP96 4.5 19.8 1.0
SG B:CYS93 4.7 19.2 1.0
C B:CYS105 4.8 14.9 1.0
O B:CYS105 5.0 16.1 1.0

Reference:

J.S.Depelteau, L.Renault, N.Althof, C.K.Cassidy, L.M.Mendonca, G.J.Jensen, G.P.Resch, A.Briegel. Uvc Inactivation of Pathogenic Samples Suitable For Cryo-Em Analysis. Commun Biol V. 5 29 2022.
ISSN: ESSN 2399-3642
PubMed: 35017666
DOI: 10.1038/S42003-021-02962-W
Page generated: Thu Apr 6 18:38:54 2023

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