Magnesium in PDB 7ph3: Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C

All present enzymatic activity of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C:
7.5.2.6;

The structure of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C also contains other interesting chemical elements:

Gadolinium

(Gd)

2 atoms

The binding sites of Magnesium atom in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C (pdb code 7ph3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C, PDB code: 7ph3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:20.6 occ:1.00 OE1 A:GLN424 2.0 22.0 1.0 O A:HOH701 2.1 30.0 1.0 OG A:SER383 2.1 18.1 1.0 O3G A:ANP601 2.1 17.8 1.0 O A:HOH702 2.1 30.0 1.0 O2B A:ANP601 2.1 17.8 1.0 CD A:GLN424 3.0 22.0 1.0 PG A:ANP601 3.2 17.8 1.0 PB A:ANP601 3.3 17.8 1.0 CB A:SER383 3.4 18.1 1.0 NE2 A:GLN424 3.4 22.0 1.0 O1G A:ANP601 3.6 17.8 1.0 N3B A:ANP601 3.6 17.8 1.0 OD1 A:ASP505 4.1 24.0 1.0 N A:SER383 4.1 18.1 1.0 CG A:GLN424 4.2 22.0 1.0 OD2 A:ASP505 4.2 24.0 1.0 O2A A:ANP601 4.3 17.8 1.0 OE2 A:GLU506 4.3 26.6 1.0 CA A:SER383 4.3 18.1 1.0 O1B A:ANP601 4.3 17.8 1.0 CB A:GLN424 4.4 22.0 1.0 O3A A:ANP601 4.4 17.8 1.0 O2G A:ANP601 4.4 17.8 1.0 CG A:ASP505 4.5 24.0 1.0 N B:GLY483 4.6 18.7 1.0 CD A:GLU506 4.8 26.6 1.0 PA A:ANP601 4.9 17.8 1.0

Magnesium binding site 2 out of 2 in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:19.1 occ:1.00 O2B B:ANP601 2.0 16.1 1.0 O1G B:ANP601 2.0 16.1 1.0 O B:HOH701 2.1 30.0 1.0 OG B:SER383 2.1 16.8 1.0 O B:HOH702 2.1 30.0 1.0 OE1 B:GLN424 2.1 22.0 1.0 CD B:GLN424 3.0 22.0 1.0 PG B:ANP601 3.1 16.1 1.0 PB B:ANP601 3.3 16.1 1.0 CB B:SER383 3.4 16.8 1.0 NE2 B:GLN424 3.4 22.0 1.0 N3B B:ANP601 3.5 16.1 1.0 O2G B:ANP601 3.6 16.1 1.0 N B:SER383 4.1 16.8 1.0 OD1 B:ASP505 4.1 24.0 1.0 O2A B:ANP601 4.2 16.1 1.0 CG B:GLN424 4.3 22.0 1.0 O1B B:ANP601 4.3 16.1 1.0 OE1 B:GLU506 4.3 26.5 1.0 CA B:SER383 4.3 16.8 1.0 OD2 B:ASP505 4.3 24.0 1.0 O3A B:ANP601 4.4 16.1 1.0 O3G B:ANP601 4.4 16.1 1.0 CB B:GLN424 4.5 22.0 1.0 CG B:ASP505 4.6 24.0 1.0 N A:GLY483 4.7 16.9 1.0 PA B:ANP601 4.8 16.1 1.0 CD B:GLU506 5.0 26.5 1.0

L.Galazzo, G.Meier, D.Januliene, K.Parey, D.De Vecchis, B.Striednig, H.Hilbi, L.V.Schafer, I.Kuprov, A.Moeller, E.Bordignon, M.A.Seeger. The Abc Transporter Msba Adopts the Wide Inward-Open Conformation in E. Coli Cells. Sci Adv V. 8 N6845 2022.
ISSN: ESSN 2375-2548
PubMed: 36223470
DOI: 10.1126/SCIADV.ABN6845