Magnesium in PDB 7ph4: Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C

Enzymatic activity of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C

All present enzymatic activity of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C:
7.5.2.6;

Other elements in 7ph4:

The structure of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C also contains other interesting chemical elements:

Gadolinium (Gd) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C (pdb code 7ph4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C, PDB code: 7ph4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7ph4

Go back to Magnesium Binding Sites List in 7ph4
Magnesium binding site 1 out of 2 in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:20.6
occ:1.00
O2B A:ANP601 2.0 17.8 1.0
O A:HOH701 2.0 30.0 1.0
O A:HOH702 2.0 30.0 1.0
O2G A:ANP601 2.1 17.8 1.0
OG A:SER383 2.2 18.1 1.0
OE1 A:GLN424 2.6 22.0 1.0
PG A:ANP601 2.8 17.8 1.0
N3B A:ANP601 2.9 17.8 1.0
PB A:ANP601 2.9 17.8 1.0
O3G A:ANP601 3.5 17.8 1.0
CB A:SER383 3.5 18.1 1.0
CD A:GLN424 3.7 22.0 1.0
O3A A:ANP601 3.8 17.8 1.0
O1G A:ANP601 4.0 17.8 1.0
O1B A:ANP601 4.2 17.8 1.0
N A:SER383 4.2 18.1 1.0
NE2 A:GLN424 4.3 22.0 1.0
N B:GLY483 4.3 18.7 1.0
O2A A:ANP601 4.3 17.8 1.0
OE1 A:GLU506 4.4 26.6 1.0
OD1 A:ASP505 4.4 24.0 1.0
CA A:SER383 4.5 18.1 1.0
PA A:ANP601 4.6 17.8 1.0
CB B:SER482 4.6 16.9 1.0
CG A:GLN424 4.9 22.0 1.0
CB A:GLN424 4.9 22.0 1.0
NZ A:LYS382 5.0 20.2 1.0

Magnesium binding site 2 out of 2 in 7ph4

Go back to Magnesium Binding Sites List in 7ph4
Magnesium binding site 2 out of 2 in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position T68C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:19.1
occ:1.00
O2G B:ANP601 2.0 16.1 1.0
OG B:SER383 2.1 16.8 1.0
O B:HOH701 2.1 30.0 1.0
O B:HOH702 2.1 30.0 1.0
O2B B:ANP601 2.1 16.1 1.0
OE1 B:GLN424 2.1 22.0 1.0
O3G B:ANP601 2.8 16.1 1.0
PG B:ANP601 2.8 16.1 1.0
PB B:ANP601 3.2 16.1 1.0
CD B:GLN424 3.2 22.0 1.0
CB B:SER383 3.3 16.8 1.0
N3B B:ANP601 3.3 16.1 1.0
NE2 B:GLN424 3.7 22.0 1.0
O3A B:ANP601 3.9 16.1 1.0
OD1 B:ASP505 4.0 24.0 1.0
N B:SER383 4.1 16.8 1.0
O1G B:ANP601 4.1 16.1 1.0
CA B:SER383 4.3 16.8 1.0
OE1 B:GLU506 4.3 26.5 1.0
O1B B:ANP601 4.4 16.1 1.0
CG B:GLN424 4.5 22.0 1.0
O2A B:ANP601 4.6 16.1 1.0
OD2 B:ASP505 4.7 24.0 1.0
N A:GLY483 4.7 16.9 1.0
CB B:GLN424 4.7 22.0 1.0
PA B:ANP601 4.8 16.1 1.0
CG B:ASP505 4.8 24.0 1.0

Reference:

L.Galazzo, G.Meier, D.Januliene, K.Parey, D.De Vecchis, B.Striednig, H.Hilbi, L.V.Schafer, I.Kuprov, A.Moeller, E.Bordignon, M.A.Seeger. The Abc Transporter Msba Adopts the Wide Inward-Open Conformation in E. Coli Cells. Sci Adv V. 8 N6845 2022.
ISSN: ESSN 2375-2548
PubMed: 36223470
DOI: 10.1126/SCIADV.ABN6845
Page generated: Thu Oct 3 04:10:02 2024

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