Magnesium in PDB 7pm5: Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER) (pdb code 7pm5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER), PDB code: 7pm5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:81.0 occ:1.00 O1B A:ADP1902 2.0 90.2 1.0 OG1 A:THR170 2.4 84.5 1.0 OG A:SER218 3.1 78.6 1.0 PB A:ADP1902 3.4 90.2 1.0 CB A:THR170 3.6 84.5 1.0 O3B A:ADP1902 3.8 90.2 1.0 O3A A:ADP1902 4.0 90.2 1.0 ND2 A:ASN208 4.2 75.9 1.0 OD2 A:ASP437 4.2 80.3 1.0 CG2 A:THR170 4.2 84.5 1.0 OE2 A:GLU204 4.3 84.4 1.0 CB A:SER218 4.3 78.6 1.0 O2B A:ADP1902 4.6 90.2 1.0 CD A:GLU204 4.7 84.4 1.0 CA A:THR170 4.7 84.5 1.0 O1A A:ADP1902 4.7 90.2 1.0 N A:THR170 4.8 84.5 1.0 PA A:ADP1902 4.8 90.2 1.0 O A:ASN216 4.8 80.0 1.0 O2A A:ADP1902 4.9 90.2 1.0 ND2 A:ASN216 4.9 80.0 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:81.3 occ:1.00 O2B C:ADP401 2.2 77.3 1.0 PB C:ADP401 3.3 77.3 1.0 O3B C:ADP401 3.5 77.3 1.0 O2A C:ADP401 3.8 77.3 1.0 O3A C:ADP401 4.1 77.3 1.0 OD2 C:ASP11 4.3 77.6 1.0 NE2 C:GLN137 4.3 73.4 1.0 OD1 C:ASP154 4.4 69.3 1.0 CA C:GLY156 4.4 71.8 1.0 CG2 C:VAL339 4.5 65.6 1.0 OD2 C:ASP154 4.5 69.3 1.0 CA C:GLY301 4.5 69.7 1.0 CD C:GLN137 4.5 73.4 1.0 PA C:ADP401 4.6 77.3 1.0 NZ C:LYS18 4.6 70.1 1.0 O1B C:ADP401 4.6 77.3 1.0 OE1 C:GLN137 4.7 73.4 1.0 CG C:ASP154 4.9 69.3 1.0 CB C:VAL339 4.9 65.6 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724