Atomistry » Magnesium » PDB 7plz-7prc » 7pm6
Atomistry »
  Magnesium »
    PDB 7plz-7prc »
      7pm6 »

Magnesium in PDB 7pm6: Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) (pdb code 7pm6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER), PDB code: 7pm6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7pm6

Go back to Magnesium Binding Sites List in 7pm6
Magnesium binding site 1 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1901

b:71.5
occ:1.00
O1B A:ADP1902 1.9 78.4 1.0
OG1 A:THR170 2.6 74.2 1.0
OG A:SER218 2.8 63.1 1.0
PB A:ADP1902 3.2 78.4 1.0
O3B A:ADP1902 3.6 78.4 1.0
CB A:THR170 3.9 74.2 1.0
CB A:SER218 4.0 63.1 1.0
O3A A:ADP1902 4.0 78.4 1.0
O2B A:ADP1902 4.4 78.4 1.0
OD2 A:ASP437 4.4 66.0 1.0
ND2 A:ASN208 4.5 65.4 1.0
O A:ASN216 4.5 66.9 1.0
OE2 A:GLU204 4.6 73.1 1.0
CG2 A:THR170 4.7 74.2 1.0
N A:SER218 4.7 63.1 1.0
N A:THR170 4.8 74.2 1.0
PA A:ADP1902 4.8 78.4 1.0
O1A A:ADP1902 4.9 78.4 1.0
ND2 A:ASN216 4.9 66.9 1.0
CA A:THR170 4.9 74.2 1.0
NZ A:LYS169 4.9 70.9 1.0
CA A:SER218 4.9 63.1 1.0

Magnesium binding site 2 out of 5 in 7pm6

Go back to Magnesium Binding Sites List in 7pm6
Magnesium binding site 2 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:53.5
occ:1.00
O2B C:ADP401 2.3 54.8 1.0
PB C:ADP401 3.5 54.8 1.0
O2A C:ADP401 3.6 54.8 1.0
O3B C:ADP401 3.7 54.8 1.0
OD1 C:ASP154 4.0 52.2 1.0
CA C:GLY156 4.0 50.6 1.0
O3A C:ADP401 4.1 54.8 1.0
OD2 C:ASP154 4.3 52.2 1.0
PA C:ADP401 4.4 54.8 1.0
CA C:GLY301 4.5 50.2 1.0
OE1 C:GLN137 4.5 54.7 1.0
NE2 C:GLN137 4.5 54.7 1.0
N C:GLY156 4.6 50.6 1.0
CG C:ASP154 4.6 52.2 1.0
CD C:GLN137 4.6 54.7 1.0
O1B C:ADP401 4.7 54.8 1.0
O C:SER155 4.7 50.6 1.0
CG2 C:VAL339 4.8 47.0 1.0
C C:SER155 4.8 50.6 1.0
OD2 C:ASP11 4.9 57.5 1.0

Magnesium binding site 3 out of 5 in 7pm6

Go back to Magnesium Binding Sites List in 7pm6
Magnesium binding site 3 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1901

b:75.5
occ:1.00
O1B D:ADP1902 2.0 84.0 1.0
OG1 D:THR170 2.3 79.5 1.0
OG D:SER218 2.9 68.2 1.0
PB D:ADP1902 3.4 84.0 1.0
CB D:THR170 3.6 79.5 1.0
O3B D:ADP1902 3.8 84.0 1.0
CB D:SER218 4.1 68.2 1.0
O3A D:ADP1902 4.2 84.0 1.0
ND2 D:ASN208 4.2 70.6 1.0
CG2 D:THR170 4.2 79.5 1.0
OD2 D:ASP437 4.2 71.7 1.0
O2B D:ADP1902 4.5 84.0 1.0
OE2 D:GLU204 4.5 80.6 1.0
CA D:THR170 4.7 79.5 1.0
N D:THR170 4.7 79.5 1.0
O D:ASN216 4.7 73.0 1.0
CD D:GLU204 4.9 80.6 1.0
ND2 D:ASN216 4.9 73.0 1.0
O2A D:ADP1902 4.9 84.0 1.0
N D:SER218 5.0 68.2 1.0

Magnesium binding site 4 out of 5 in 7pm6

Go back to Magnesium Binding Sites List in 7pm6
Magnesium binding site 4 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg402

b:52.3
occ:1.00
O2B F:ADP401 2.0 54.1 1.0
PB F:ADP401 3.4 54.1 1.0
O2A F:ADP401 3.5 54.1 1.0
O3B F:ADP401 3.8 54.1 1.0
OD1 F:ASP154 4.1 50.4 1.0
O3A F:ADP401 4.1 54.1 1.0
CA F:GLY156 4.1 49.3 1.0
CA F:GLY301 4.3 49.1 1.0
PA F:ADP401 4.3 54.1 1.0
OD2 F:ASP154 4.4 50.4 1.0
O1B F:ADP401 4.5 54.1 1.0
CG2 F:VAL339 4.6 45.8 1.0
CG F:ASP154 4.6 50.4 1.0
OE1 F:GLN137 4.7 53.2 1.0
NE2 F:GLN137 4.7 53.2 1.0
N F:GLY156 4.7 49.3 1.0
CD F:GLN137 4.7 53.2 1.0
NZ F:LYS18 4.7 49.9 1.0
O F:SER155 4.8 49.6 1.0
OD2 F:ASP11 4.9 57.2 1.0
C F:SER155 4.9 49.6 1.0

Magnesium binding site 5 out of 5 in 7pm6

Go back to Magnesium Binding Sites List in 7pm6
Magnesium binding site 5 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg402

b:53.7
occ:1.00
O2B G:ADP401 2.0 52.6 1.0
PB G:ADP401 3.3 52.6 1.0
O2A G:ADP401 3.6 52.6 1.0
O3B G:ADP401 3.7 52.6 1.0
O3A G:ADP401 4.0 52.6 1.0
CA G:GLY156 4.2 49.9 1.0
OD1 G:ASP154 4.3 52.9 1.0
NE2 G:GLN137 4.3 55.8 1.0
OD2 G:ASP11 4.3 58.5 1.0
PA G:ADP401 4.4 52.6 1.0
O1B G:ADP401 4.5 52.6 1.0
NZ G:LYS18 4.5 50.4 1.0
CD G:GLN137 4.5 55.8 1.0
OE1 G:GLN137 4.6 55.8 1.0
OD2 G:ASP154 4.6 52.9 1.0
CA G:GLY301 4.8 48.6 1.0
CG2 G:VAL339 4.8 47.6 1.0
CA G:GLY13 4.9 56.8 1.0
N G:GLY156 4.9 49.9 1.0
CG G:ASP154 4.9 52.9 1.0

Reference:

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724
Page generated: Thu Oct 3 04:39:38 2024

Last articles

Sr in 3BNQ
Sr in 2X53
Sr in 2SPT
Sr in 2QJY
Sr in 2XRM
Sr in 2WOH
Sr in 2RIO
Sr in 2PN4
Sr in 2QJP
Sr in 2HMP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy