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Magnesium in PDB 7pma: Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5) (pdb code 7pma). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5), PDB code: 7pma:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7pma

Go back to Magnesium Binding Sites List in 7pma
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1901

b:61.2
occ:1.00
O1B A:ADP1902 2.1 68.9 1.0
O3B A:ADP1902 2.2 68.9 1.0
PB A:ADP1902 2.5 68.9 1.0
OG1 A:THR170 3.1 69.1 1.0
O3A A:ADP1902 3.3 68.9 1.0
OG A:SER218 3.8 59.1 1.0
O2B A:ADP1902 3.9 68.9 1.0
CB A:THR170 4.2 69.1 1.0
NZ A:LYS169 4.3 64.9 1.0
O A:ASN216 4.3 64.6 1.0
PA A:ADP1902 4.4 68.9 1.0
O1A A:ADP1902 4.5 68.9 1.0
CB A:SER218 4.6 59.1 1.0
ND2 A:ASN208 4.7 58.6 1.0
N A:SER218 4.8 59.1 1.0
N A:THR170 4.8 69.1 1.0
OD2 A:ASP437 4.8 61.8 1.0
CE A:LYS169 4.8 64.9 1.0
O2A A:ADP1902 4.8 68.9 1.0

Magnesium binding site 2 out of 2 in 7pma

Go back to Magnesium Binding Sites List in 7pma
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:56.5
occ:1.00
O2B C:ADP401 2.1 57.5 1.0
O2A C:ADP401 2.8 57.5 1.0
PB C:ADP401 3.0 57.5 1.0
O3B C:ADP401 3.2 57.5 1.0
O3A C:ADP401 3.5 57.5 1.0
PA C:ADP401 3.6 57.5 1.0
NZ C:LYS18 3.9 50.3 1.0
CA C:GLY156 4.1 54.1 1.0
O1A C:ADP401 4.3 57.5 1.0
OE1 C:GLN137 4.4 50.1 1.0
O1B C:ADP401 4.4 57.5 1.0
CA C:GLY301 4.6 50.2 1.0
OD2 C:ASP11 4.6 56.3 1.0
CD C:GLN137 4.8 50.1 1.0
N C:GLY156 4.9 54.1 1.0
OD1 C:ASP154 4.9 49.5 1.0
NE2 C:GLN137 4.9 50.1 1.0

Reference:

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724
Page generated: Thu Oct 3 04:40:18 2024

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