Magnesium in PDB 7pma: Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5) (pdb code 7pma). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5), PDB code: 7pma:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:61.2 occ:1.00 O1B A:ADP1902 2.1 68.9 1.0 O3B A:ADP1902 2.2 68.9 1.0 PB A:ADP1902 2.5 68.9 1.0 OG1 A:THR170 3.1 69.1 1.0 O3A A:ADP1902 3.3 68.9 1.0 OG A:SER218 3.8 59.1 1.0 O2B A:ADP1902 3.9 68.9 1.0 CB A:THR170 4.2 69.1 1.0 NZ A:LYS169 4.3 64.9 1.0 O A:ASN216 4.3 64.6 1.0 PA A:ADP1902 4.4 68.9 1.0 O1A A:ADP1902 4.5 68.9 1.0 CB A:SER218 4.6 59.1 1.0 ND2 A:ASN208 4.7 58.6 1.0 N A:SER218 4.8 59.1 1.0 N A:THR170 4.8 69.1 1.0 OD2 A:ASP437 4.8 61.8 1.0 CE A:LYS169 4.8 64.9 1.0 O2A A:ADP1902 4.8 68.9 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 5) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:56.5 occ:1.00 O2B C:ADP401 2.1 57.5 1.0 O2A C:ADP401 2.8 57.5 1.0 PB C:ADP401 3.0 57.5 1.0 O3B C:ADP401 3.2 57.5 1.0 O3A C:ADP401 3.5 57.5 1.0 PA C:ADP401 3.6 57.5 1.0 NZ C:LYS18 3.9 50.3 1.0 CA C:GLY156 4.1 54.1 1.0 O1A C:ADP401 4.3 57.5 1.0 OE1 C:GLN137 4.4 50.1 1.0 O1B C:ADP401 4.4 57.5 1.0 CA C:GLY301 4.6 50.2 1.0 OD2 C:ASP11 4.6 56.3 1.0 CD C:GLN137 4.8 50.1 1.0 N C:GLY156 4.9 54.1 1.0 OD1 C:ASP154 4.9 49.5 1.0 NE2 C:GLN137 4.9 50.1 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724