Magnesium in PDB 7pme: Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) (pdb code 7pme). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER), PDB code: 7pme:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1902 b:90.9 occ:1.00 O3G A:ANP1901 2.1 95.6 1.0 N3B A:ANP1901 2.4 95.6 1.0 PG A:ANP1901 2.4 95.6 1.0 O2G A:ANP1901 2.8 95.6 1.0 OG A:SER218 3.2 66.6 1.0 PB A:ANP1901 3.8 95.6 1.0 OG1 A:THR170 3.8 88.9 1.0 O1G A:ANP1901 3.9 95.6 1.0 O1B A:ANP1901 4.1 95.6 1.0 CB A:SER218 4.2 66.6 1.0 O2B A:ANP1901 4.2 95.6 1.0 OD2 A:ASP437 4.2 68.9 1.0 OG A:SER165 4.6 87.5 1.0 ND2 A:ASN208 4.6 66.3 1.0 O A:ASN216 4.6 74.5 1.0

Magnesium binding site 2 out of 7 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1903 b:93.0 occ:1.00 O1B A:ANP1901 2.3 95.6 1.0 O1A A:ANP1901 2.7 95.6 1.0 PB A:ANP1901 3.2 95.6 1.0 O2B A:ANP1901 3.4 95.6 1.0 C5' A:ANP1901 3.6 95.6 1.0 PA A:ANP1901 3.7 95.6 1.0 O3A A:ANP1901 3.7 95.6 1.0 O5' A:ANP1901 4.1 95.6 1.0 C4' A:ANP1901 4.7 95.6 1.0 N3B A:ANP1901 4.7 95.6 1.0 C3' A:ANP1901 4.9 95.6 1.0

Magnesium binding site 3 out of 7 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:60.8 occ:1.00 O3B C:ADP401 2.0 61.8 1.0 NE2 C:GLN137 3.0 59.1 1.0 PB C:ADP401 3.3 61.8 1.0 CD C:GLN137 3.7 59.1 1.0 OD2 C:ASP11 3.8 64.8 1.0 O1B C:ADP401 4.0 61.8 1.0 O2B C:ADP401 4.0 61.8 1.0 O2A C:ADP401 4.2 61.8 1.0 OE1 C:GLN137 4.3 59.1 1.0 OD1 C:ASP11 4.5 64.8 1.0 OD2 C:ASP154 4.5 57.6 1.0 O3A C:ADP401 4.5 61.8 1.0 CG C:GLN137 4.5 59.1 1.0 CG C:ASP11 4.5 64.8 1.0 OD1 C:ASP154 4.6 57.6 1.0 CG2 C:VAL339 4.6 50.7 1.0 CA C:GLY156 4.7 58.6 1.0 CA C:GLY13 4.8 66.0 1.0 CB C:VAL339 4.9 50.7 1.0 NZ C:LYS18 4.9 54.3 1.0 PA C:ADP401 5.0 61.8 1.0 CG C:ASP154 5.0 57.6 1.0

Magnesium binding site 4 out of 7 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1902 b:85.9 occ:1.00 O3G D:ANP1901 2.2 98.5 1.0 N3B D:ANP1901 2.7 98.5 1.0 PG D:ANP1901 2.8 98.5 1.0 OG D:SER218 3.1 69.1 1.0 O2G D:ANP1901 3.4 98.5 1.0 OG1 D:THR170 3.5 90.8 1.0 OD2 D:ASP437 3.8 73.8 1.0 CB D:SER218 4.1 69.1 1.0 PB D:ANP1901 4.2 98.5 1.0 O1G D:ANP1901 4.2 98.5 1.0 O1B D:ANP1901 4.5 98.5 1.0 ND2 D:ASN208 4.6 70.3 1.0 CG D:ASP437 4.8 73.8 1.0 O2B D:ANP1901 4.8 98.5 1.0 OD1 D:ASP437 4.9 73.8 1.0 CB D:THR170 4.9 90.8 1.0

Magnesium binding site 5 out of 7 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1903 b:100.6 occ:1.00 O1B D:ANP1901 2.3 98.5 1.0 O1A D:ANP1901 2.8 98.5 1.0 PB D:ANP1901 3.4 98.5 1.0 O2B D:ANP1901 3.6 98.5 1.0 PA D:ANP1901 3.8 98.5 1.0 C5' D:ANP1901 3.8 98.5 1.0 O3A D:ANP1901 3.9 98.5 1.0 O5' D:ANP1901 4.3 98.5 1.0 N3B D:ANP1901 4.8 98.5 1.0 C4' D:ANP1901 4.9 98.5 1.0 C3' D:ANP1901 5.0 98.5 1.0

Magnesium binding site 6 out of 7 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:58.5 occ:1.00 O3B F:ADP401 2.0 60.7 1.0 PB F:ADP401 3.5 60.7 1.0 O2A F:ADP401 3.5 60.7 1.0 OD2 F:ASP11 4.1 64.3 1.0 NE2 F:GLN137 4.1 60.0 1.0 O1B F:ADP401 4.1 60.7 1.0 OD1 F:ASP154 4.3 56.9 1.0 CA F:GLY301 4.3 54.7 1.0 O3A F:ADP401 4.3 60.7 1.0 CG2 F:VAL339 4.4 50.7 1.0 O2B F:ADP401 4.4 60.7 1.0 OD2 F:ASP154 4.4 56.9 1.0 CA F:GLY156 4.5 57.2 1.0 PA F:ADP401 4.5 60.7 1.0 CD F:GLN137 4.7 60.0 1.0 CB F:VAL339 4.7 50.7 1.0 NZ F:LYS18 4.7 54.0 1.0 CG F:ASP154 4.8 56.9 1.0 N F:GLY156 4.9 57.2 1.0

Magnesium binding site 7 out of 7 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:59.5 occ:1.00 O3B G:ADP401 2.0 61.1 1.0 PB G:ADP401 3.5 61.1 1.0 O2A G:ADP401 3.5 61.1 1.0 NE2 G:GLN137 3.9 61.5 1.0 OD2 G:ASP11 4.0 64.6 1.0 O1B G:ADP401 4.1 61.1 1.0 OD1 G:ASP154 4.3 58.3 1.0 CG2 G:VAL339 4.3 50.4 1.0 O3A G:ADP401 4.3 61.1 1.0 OD2 G:ASP154 4.5 58.3 1.0 O2B G:ADP401 4.5 61.1 1.0 CA G:GLY301 4.5 55.0 1.0 PA G:ADP401 4.5 61.1 1.0 CA G:GLY156 4.5 58.5 1.0 CD G:GLN137 4.5 61.5 1.0 CB G:VAL339 4.7 50.4 1.0 NZ G:LYS18 4.8 54.0 1.0 CG G:ASP154 4.8 58.3 1.0 N G:GLY156 4.9 58.5 1.0 CG G:ASP11 4.9 64.6 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724