Magnesium in PDB 7pmh: Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4) (pdb code 7pmh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4), PDB code: 7pmh:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1902 b:71.8 occ:1.00 O3G A:ANP1901 2.0 81.5 1.0 PG A:ANP1901 2.7 81.5 1.0 O2G A:ANP1901 2.9 81.5 1.0 N3B A:ANP1901 3.0 81.5 1.0 OG A:SER218 3.3 50.4 1.0 OG1 A:THR170 3.8 72.8 1.0 PB A:ANP1901 4.0 81.5 1.0 OG A:SER165 4.1 71.6 1.0 O2B A:ANP1901 4.1 81.5 1.0 O1G A:ANP1901 4.1 81.5 1.0 ND2 A:ASN208 4.2 50.1 1.0 O1B A:ANP1901 4.2 81.5 1.0 O A:ASN216 4.3 57.5 1.0 CB A:SER218 4.6 50.4 1.0 CB A:SER165 4.7 71.6 1.0 OD2 A:ASP437 4.9 49.4 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1903 b:85.2 occ:1.00 O1A A:ANP1901 2.0 81.5 1.0 O1B A:ANP1901 2.0 81.5 1.0 O2B A:ANP1901 2.1 81.5 1.0 PB A:ANP1901 2.4 81.5 1.0 PA A:ANP1901 2.9 81.5 1.0 O3A A:ANP1901 3.1 81.5 1.0 O5' A:ANP1901 3.3 81.5 1.0 C5' A:ANP1901 3.8 81.5 1.0 N3B A:ANP1901 3.9 81.5 1.0 O2G A:ANP1901 4.1 81.5 1.0 O2A A:ANP1901 4.3 81.5 1.0 PG A:ANP1901 4.7 81.5 1.0 C4' A:ANP1901 5.0 81.5 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 4) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:39.3 occ:1.00 O3B C:ADP401 2.0 43.3 1.0 OE1 C:GLN137 2.9 39.2 1.0 PB C:ADP401 3.4 43.3 1.0 O2B C:ADP401 3.8 43.3 1.0 O2A C:ADP401 3.9 43.3 1.0 CD C:GLN137 4.0 39.2 1.0 O3A C:ADP401 4.2 43.3 1.0 OD2 C:ASP11 4.2 44.0 1.0 OD2 C:ASP154 4.4 41.3 1.0 NE2 C:GLN137 4.5 39.2 1.0 O1B C:ADP401 4.5 43.3 1.0 CA C:GLY13 4.7 44.3 1.0 OD1 C:ASP154 4.7 41.3 1.0 CG2 C:VAL339 4.7 32.8 1.0 CA C:GLY156 4.7 42.3 1.0 PA C:ADP401 4.7 43.3 1.0 NZ C:LYS18 4.7 37.8 1.0 OD1 C:ASP11 4.8 44.0 1.0 N C:GLY156 4.9 42.3 1.0 CG C:ASP11 5.0 44.0 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724