Magnesium in PDB 7pmi: Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5) (pdb code 7pmi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5), PDB code: 7pmi:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1902 b:80.7 occ:1.00 O2G A:ANP1901 1.9 89.6 1.0 O3G A:ANP1901 2.4 89.6 1.0 PG A:ANP1901 2.5 89.6 1.0 OG1 A:THR170 2.9 79.3 1.0 N3B A:ANP1901 3.1 89.6 1.0 OG A:SER218 3.6 55.0 1.0 O1G A:ANP1901 3.9 89.6 1.0 OD2 A:ASP437 3.9 58.1 1.0 OG A:SER165 3.9 82.5 1.0 O2B A:ANP1901 4.3 89.6 1.0 PB A:ANP1901 4.3 89.6 1.0 CB A:THR170 4.3 79.3 1.0 CB A:SER165 4.7 82.5 1.0 CB A:SER218 4.7 55.0 1.0 ND2 A:ASN208 4.8 54.0 1.0 OE2 A:GLU204 4.9 61.9 1.0 CG A:ASP437 4.9 58.1 1.0 CD A:GLU204 4.9 61.9 1.0 N A:THR170 4.9 79.3 1.0 O A:ASN216 5.0 63.1 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1903 b:82.4 occ:1.00 O1A A:ANP1901 2.6 89.6 1.0 O1B A:ANP1901 2.8 89.6 1.0 PA A:ANP1901 3.9 89.6 1.0 PB A:ANP1901 4.2 89.6 1.0 O3A A:ANP1901 4.5 89.6 1.0 O2A A:ANP1901 4.5 89.6 1.0 N3B A:ANP1901 4.8 89.6 1.0 OE2 A:GLU204 4.9 61.9 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 5) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:50.6 occ:1.00 O3B C:ADP401 1.9 51.6 1.0 OE1 C:GLN137 2.8 47.6 1.0 PB C:ADP401 3.3 51.6 1.0 O2B C:ADP401 3.8 51.6 1.0 O2A C:ADP401 3.9 51.6 1.0 CD C:GLN137 4.0 47.6 1.0 O3A C:ADP401 4.2 51.6 1.0 OD2 C:ASP11 4.3 51.3 1.0 O1B C:ADP401 4.3 51.6 1.0 CA C:GLY156 4.3 47.8 1.0 OD2 C:ASP154 4.6 46.1 1.0 CG2 C:VAL339 4.6 37.6 1.0 N C:GLY156 4.7 47.8 1.0 OD1 C:ASP154 4.7 46.1 1.0 PA C:ADP401 4.7 51.6 1.0 NZ C:LYS18 4.8 41.8 1.0 NE2 C:GLN137 4.9 47.6 1.0 CG C:GLN137 4.9 47.6 1.0 CA C:GLY301 4.9 45.8 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724