Magnesium in PDB 7pmj: Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6) (pdb code 7pmj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6), PDB code: 7pmj:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1902 b:78.2 occ:1.00 O1B A:ANP1901 2.0 83.3 1.0 N3B A:ANP1901 2.2 83.3 1.0 PB A:ANP1901 2.4 83.3 1.0 O3A A:ANP1901 2.8 83.3 1.0 O2G A:ANP1901 3.1 83.3 1.0 PG A:ANP1901 3.1 83.3 1.0 O1A A:ANP1901 3.4 83.3 1.0 O3G A:ANP1901 3.7 83.3 1.0 PA A:ANP1901 3.7 83.3 1.0 O2B A:ANP1901 3.9 83.3 1.0 OG1 A:THR170 4.1 77.8 1.0 MG A:MG1903 4.1 80.0 1.0 O A:ASN216 4.1 60.9 1.0 O1G A:ANP1901 4.5 83.3 1.0 O2A A:ANP1901 4.7 83.3 1.0 O5' A:ANP1901 4.8 83.3 1.0 OG A:SER218 4.8 56.7 1.0 ND2 A:ASN208 4.9 53.1 1.0 CB A:THR170 4.9 77.8 1.0 OE1 A:GLU204 4.9 63.6 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1903 b:80.0 occ:1.00 O1A A:ANP1901 1.9 83.3 1.0 C5' A:ANP1901 2.5 83.3 1.0 PA A:ANP1901 3.0 83.3 1.0 O1B A:ANP1901 3.0 83.3 1.0 O5' A:ANP1901 3.1 83.3 1.0 C4' A:ANP1901 3.8 83.3 1.0 O3A A:ANP1901 3.9 83.3 1.0 PB A:ANP1901 4.0 83.3 1.0 MG A:MG1902 4.1 78.2 1.0 O2A A:ANP1901 4.2 83.3 1.0 C3' A:ANP1901 4.2 83.3 1.0 O2B A:ANP1901 4.6 83.3 1.0 O3' A:ANP1901 4.8 83.3 1.0 O4' A:ANP1901 4.9 83.3 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Post-Rigor Transition State (Appnhp, Central 1ER, Class 6) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:55.4 occ:1.00 O3B C:ADP401 1.9 49.6 1.0 NE2 C:GLN137 3.2 41.2 1.0 PB C:ADP401 3.2 49.6 1.0 O2B C:ADP401 3.8 49.6 1.0 CD C:GLN137 3.9 41.2 1.0 OD2 C:ASP154 4.0 43.9 1.0 O1B C:ADP401 4.1 49.6 1.0 OD2 C:ASP11 4.1 47.3 1.0 CA C:GLY156 4.2 46.1 1.0 OE1 C:GLN137 4.2 41.2 1.0 O2A C:ADP401 4.3 49.6 1.0 O3A C:ADP401 4.3 49.6 1.0 N C:GLY156 4.4 46.1 1.0 OD1 C:ASP154 4.6 43.9 1.0 OD1 C:ASP11 4.7 47.3 1.0 CG C:ASP154 4.7 43.9 1.0 CG C:GLN137 4.8 41.2 1.0 CG C:ASP11 4.8 47.3 1.0 CA C:GLY13 4.8 47.9 1.0 PA C:ADP401 5.0 49.6 1.0 CG2 C:VAL339 5.0 41.6 1.0 NZ C:LYS18 5.0 40.4 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724