Magnesium in PDB 7pn4: Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene

Enzymatic activity of Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene

All present enzymatic activity of Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene:
1.11.2.1;

Protein crystallography data

The structure of Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene, PDB code: 7pn4 was solved by A.Fernandez-Garcia, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.10 / 2.05
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.957, 57.651, 60.628, 90, 109.44, 90
R / Rfree (%) 16.8 / 20.9

Other elements in 7pn4:

The structure of Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene (pdb code 7pn4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene, PDB code: 7pn4:

Magnesium binding site 1 out of 1 in 7pn4

Go back to Magnesium Binding Sites List in 7pn4
Magnesium binding site 1 out of 1 in the Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Evolved Unspecific Peroxygenase with A77L Mutation in Complex with Naphthalene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:20.4
occ:1.00
 OE2 A:GLU122 2.0 20.6 1.0
O2A A:HEM401 2.0 19.1 1.0
O A:GLY123 2.1 17.0 1.0
O A:HOH534 2.1 14.4 1.0
OG A:SER126 2.1 18.8 1.0
O A:HOH605 2.1 19.0 1.0
CGA A:HEM401 3.0 19.6 1.0
CD A:GLU122 3.0 20.2 1.0
C A:GLY123 3.2 17.7 1.0
O1A A:HEM401 3.2 21.1 1.0
CB A:SER126 3.3 18.9 1.0
CG A:GLU122 3.4 20.5 1.0
N A:GLY123 3.5 17.8 1.0
O A:HOH566 3.9 17.3 1.0
CA A:GLY123 3.9 17.3 1.0
OE1 A:GLU122 4.2 20.3 1.0
O A:ASN137 4.2 20.8 1.0
O A:HOH560 4.2 17.4 1.0
O A:HOH523 4.3 16.3 1.0
N A:ASP124 4.3 17.8 1.0
CBA A:HEM401 4.3 19.3 1.0
NH2 A:ARG189 4.4 19.2 1.0
CA A:SER126 4.4 19.4 1.0
N A:SER126 4.5 19.3 1.0
C A:GLU122 4.5 19.1 1.0
CB A:GLU122 4.7 20.3 1.0
CA A:ASP124 4.7 19.5 1.0
CZ A:ARG189 4.7 20.0 1.0
CA A:GLU122 4.7 19.4 1.0
O A:GLY130 4.8 17.8 1.0
CB A:ARG129 4.8 18.5 1.0
CAA A:HEM401 4.8 18.7 1.0
C A:ASP124 4.8 19.5 1.0
CB A:ASN137 4.8 20.2 1.0
O A:ASP124 4.9 19.3 1.0

Reference:

P.G.De Santos, A.Gonzalez-Benjumea, A.Fernandez-Garcia, C.Aranda, Y.Wu, A.But, P.Molina-Espeja, D.M.Mate, D.Gonzalez-Perez, W.Zhang, J.Kiebist, K.Scheibner, M.Hofrichter, K.Swiderek, V.Moliner, J.Sanz-Aparicio, F.Hollmann, A.Gutierrez, M.Alcalde. Engineering A Highly Regioselective Fungal Peroxygenase For the Synthesis of Hydroxy Fatty Acids Angew.Chem.Int.Ed.Engl. 2022.
ISSN: ESSN 1521-3773
DOI: 10.1002/ANIE.202217372
Page generated: Thu Apr 6 18:58:01 2023

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