Magnesium in PDB 7psm: S. Cerevisiae ATM1 in MSP1D1 Nanodiscs with Bound Amp-Pnp and MG2+

The binding sites of Magnesium atom in the S. Cerevisiae ATM1 in MSP1D1 Nanodiscs with Bound Amp-Pnp and MG2+ (pdb code 7psm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the S. Cerevisiae ATM1 in MSP1D1 Nanodiscs with Bound Amp-Pnp and MG2+, PDB code: 7psm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the S. Cerevisiae ATM1 in MSP1D1 Nanodiscs with Bound Amp-Pnp and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of S. Cerevisiae ATM1 in MSP1D1 Nanodiscs with Bound Amp-Pnp and MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:88.5 occ:1.00 O2B A:ANP701 2.1 88.6 1.0 O3G A:ANP701 2.1 88.6 1.0 OE1 A:GLN517 2.1 85.2 1.0 O1G A:ANP701 2.2 88.6 1.0 PG A:ANP701 2.4 88.6 1.0 PB A:ANP701 2.6 88.6 1.0 O1B A:ANP701 2.6 88.6 1.0 N3B A:ANP701 2.9 88.6 1.0 CD A:GLN517 3.2 85.2 1.0 NE2 A:GLN517 3.7 85.2 1.0 O2G A:ANP701 3.9 88.6 1.0 O3A A:ANP701 4.2 88.6 1.0 CE A:LYS475 4.4 83.5 1.0 N A:SER476 4.4 78.9 1.0 CG A:GLN517 4.5 85.2 1.0 CB A:SER476 4.6 78.9 1.0 CB A:LYS475 4.6 83.5 1.0 CB B:SER574 4.6 84.6 1.0 OD1 A:ASP597 4.6 85.4 0.0 CE1 A:HIS631 4.9 100.4 1.0 OG B:SER574 4.9 84.6 1.0 O1A A:ANP701 4.9 88.6 1.0 NZ A:LYS475 5.0 83.5 1.0

Magnesium binding site 2 out of 2 in the S. Cerevisiae ATM1 in MSP1D1 Nanodiscs with Bound Amp-Pnp and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of S. Cerevisiae ATM1 in MSP1D1 Nanodiscs with Bound Amp-Pnp and MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:87.0 occ:1.00 O2B B:ANP701 2.1 88.3 1.0 O3G B:ANP701 2.1 88.3 1.0 OE1 B:GLN517 2.1 84.8 1.0 O1G B:ANP701 2.2 88.3 1.0 PG B:ANP701 2.4 88.3 1.0 PB B:ANP701 2.6 88.3 1.0 O1B B:ANP701 2.6 88.3 1.0 N3B B:ANP701 2.9 88.3 1.0 CD B:GLN517 3.2 84.8 1.0 NE2 B:GLN517 3.7 84.8 1.0 O2G B:ANP701 3.9 88.3 1.0 OG B:SER476 3.9 78.9 1.0 O3A B:ANP701 4.2 88.3 1.0 CE B:LYS475 4.3 83.7 1.0 N B:SER476 4.4 78.9 1.0 CG B:GLN517 4.5 84.8 1.0 CB B:LYS475 4.6 83.7 1.0 NZ B:LYS475 4.6 83.7 1.0 CB A:SER574 4.6 85.4 1.0 CB B:SER476 4.6 78.9 1.0 OD1 B:ASP597 4.6 85.1 0.0 CE1 B:HIS631 4.9 100.7 1.0 OG A:SER574 4.9 85.4 1.0 O1A B:ANP701 4.9 88.3 1.0

T.L.Ellinghaus, T.Marcellino, V.Srinivasan, R.Lill, W.Kuhlbrandt. Conformational Changes in the Yeast Mitochondrial Abc Transporter ATM1 During the Transport Cycle. Sci Adv V. 7 K2392 2021.
ISSN: ESSN 2375-2548
PubMed: 34936443
DOI: 10.1126/SCIADV.ABK2392