Magnesium in PDB 7pu5: Structure of Sfpq-Nono Complex

The structure of Structure of Sfpq-Nono Complex, PDB code: 7pu5 was solved by S.Fribourg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.45 / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	466.999, 66.82, 126.893, 90, 105.89, 90
R / Rfree (%)	22.3 / 25.5

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Structure of Sfpq-Nono Complex (pdb code 7pu5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Structure of Sfpq-Nono Complex, PDB code: 7pu5:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:83.0 occ:1.00 OD1 B:ASP457 2.0 100.8 1.0 OD1 B:ASP353 2.2 105.3 1.0 OD2 B:ASP353 2.5 107.6 1.0 CG B:ASP353 2.7 104.9 1.0 CG B:ASP457 2.8 99.2 1.0 OD2 B:ASP457 3.1 101.2 1.0 O B:ASP353 4.2 101.1 1.0 CB B:ASP353 4.2 99.9 1.0 CB B:ASP457 4.2 93.3 1.0 CG B:ARG363 4.2 102.0 1.0 O B:VAL364 4.3 90.0 1.0 C B:ASP353 4.8 100.4 1.0 CA B:ASP457 4.8 91.0 1.0 N B:VAL364 4.8 91.9 1.0 CA B:ASP353 4.9 98.1 1.0 NZ B:LYS349 5.0 101.9 1.0

Magnesium binding site 2 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:41.5 occ:1.00 OE2 B:GLU389 3.0 85.1 1.0 OE1 B:GLU389 3.5 85.1 1.0 CD B:GLU389 3.6 82.4 1.0 NH1 A:ARG251 3.7 80.2 1.0 OE1 A:GLU238 3.8 79.1 1.0 CD A:GLU238 4.1 78.0 1.0 OE2 A:GLU238 4.2 78.7 1.0 CD1 B:LEU386 4.7 52.8 1.0 CA B:LEU386 4.8 52.8 1.0 CB B:LEU386 4.8 52.6 1.0 N B:LEU386 4.9 52.9 1.0 CZ A:ARG251 4.9 79.6 1.0 CG A:GLU238 5.0 75.1 1.0

Magnesium binding site 3 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:70.8 occ:1.00 OD1 D:ASP457 2.2 94.7 1.0 OD1 D:ASP353 2.2 112.3 1.0 OD2 D:ASP353 2.3 115.3 1.0 CG D:ASP353 2.6 111.9 1.0 CG D:ASP457 2.9 93.8 1.0 OD2 D:ASP457 3.0 96.7 1.0 O D:VAL364 4.1 80.4 1.0 CB D:ASP353 4.1 105.8 1.0 O D:ASP353 4.4 106.3 1.0 CB D:ASP457 4.4 87.9 1.0 CG D:ARG363 4.5 98.3 1.0 NZ D:LYS349 4.6 100.3 1.0 N D:VAL364 4.9 82.8 1.0 CA D:ASP353 4.9 103.2 1.0 C D:VAL364 4.9 79.9 1.0 C D:ASP353 4.9 105.5 1.0 CA D:ASP457 5.0 85.5 1.0

Magnesium binding site 4 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:41.9 occ:1.00 OE2 D:GLU389 2.8 81.5 1.0 CD D:GLU389 3.5 79.4 1.0 OE1 D:GLU389 3.5 83.5 1.0 OE1 C:GLU238 4.0 86.3 1.0 NH1 C:ARG251 4.0 72.5 1.0 CD C:GLU238 4.3 84.3 1.0 OE2 C:GLU238 4.5 86.3 1.0 CA D:LEU386 4.8 54.4 1.0 N D:LEU386 4.8 54.3 1.0 CD1 D:LEU386 4.8 56.9 1.0 CB D:LEU386 4.9 55.2 1.0 CG D:GLU389 4.9 67.0 1.0 CB D:GLU385 5.0 55.7 1.0

Magnesium binding site 5 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:52.8 occ:1.00 OD1 F:ASP353 3.4 95.1 1.0 O F:VAL364 3.5 76.7 1.0 OD2 F:ASP457 3.5 82.6 1.0 CB F:ARG365 3.6 77.8 1.0 CG F:ARG363 3.8 87.5 1.0 OD2 F:ASP353 3.9 98.4 1.0 OD1 F:ASP457 4.0 81.0 1.0 CG F:ASP353 4.0 95.2 1.0 C F:VAL364 4.0 76.2 1.0 CG F:ASP457 4.2 80.0 1.0 CA F:ARG365 4.2 75.3 1.0 N F:ARG365 4.3 75.3 1.0 CD F:ARG363 4.4 92.4 1.0 CG F:ARG365 4.4 82.8 1.0 N F:VAL364 4.6 78.1 1.0 NZ F:LYS349 4.6 95.3 1.0 CD F:ARG365 4.8 87.1 1.0 CA F:VAL364 5.0 76.7 1.0 C F:ARG363 5.0 79.9 1.0

Magnesium binding site 6 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:48.4 occ:1.00 OE2 F:GLU389 2.5 90.6 1.0 CD F:GLU389 3.5 85.5 1.0 OE1 F:GLU389 3.8 86.9 1.0 OE1 E:GLU238 3.8 71.8 1.0 CD E:GLU238 4.0 71.5 1.0 OE2 E:GLU238 4.4 72.5 1.0 NH1 E:ARG251 4.4 77.2 1.0 CB F:GLU385 4.4 54.2 1.0 CG E:GLU238 4.6 68.6 1.0 N F:LEU386 4.7 54.8 1.0 C F:GLU385 4.8 54.8 1.0 CG F:GLU389 4.8 72.1 1.0 CA F:LEU386 4.9 54.5 1.0

Magnesium binding site 7 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg601 b:60.0 occ:1.00 OD1 H:ASP353 3.2 103.0 1.0 OD2 H:ASP457 3.4 86.7 1.0 OD1 H:ASP457 3.5 85.5 1.0 OD2 H:ASP353 3.6 105.2 1.0 CG H:ASP353 3.8 102.3 1.0 O H:VAL364 3.8 88.5 1.0 CG H:ASP457 3.8 83.5 1.0 CG H:ARG363 3.9 95.6 1.0 CB H:ARG365 4.2 89.2 1.0 C H:VAL364 4.4 88.2 1.0 CD H:ARG363 4.5 98.1 1.0 NZ H:LYS349 4.6 99.7 1.0 CA H:ARG365 4.8 87.3 1.0 NH1 H:ARG363 4.8 100.3 1.0 N H:VAL364 4.8 89.6 1.0 N H:ARG365 4.8 87.2 1.0

Magnesium binding site 8 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg602 b:62.6 occ:1.00 OE2 H:GLU389 2.8 94.3 1.0 OE1 H:GLU389 3.5 93.0 1.0 CD H:GLU389 3.5 91.0 1.0 OE1 G:GLU238 3.7 81.2 1.0 NH1 G:ARG251 3.7 76.5 1.0 CD G:GLU238 4.1 81.2 1.0 OE2 G:GLU238 4.3 83.6 1.0 CA H:LEU386 4.5 60.0 1.0 CB H:LEU386 4.5 60.2 1.0 N H:LEU386 4.5 59.4 1.0 CD1 H:LEU386 4.5 61.8 1.0 CB H:GLU385 4.8 59.7 1.0 C H:GLU385 4.9 58.9 1.0 CZ G:ARG251 4.9 77.2 1.0 CG H:GLU389 4.9 79.9 1.0 CG G:GLU238 4.9 75.8 1.0

Magnesium binding site 9 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg601 b:71.7 occ:1.00 OD1 J:ASP353 2.7 102.7 1.0 OD1 J:ASP457 2.8 97.1 1.0 OD2 J:ASP353 3.0 105.0 1.0 CG J:ASP353 3.2 102.3 1.0 OD2 J:ASP457 3.3 98.8 1.0 OE2 J:GLU456 3.3 111.9 1.0 CG J:ASP457 3.4 96.7 1.0 O J:VAL364 3.5 87.5 1.0 CG J:ARG363 4.0 105.7 1.0 C J:VAL364 4.2 86.9 1.0 NZ J:LYS349 4.3 85.7 1.0 CB J:ARG365 4.4 86.0 1.0 CD J:GLU456 4.4 109.8 1.0 N J:VAL364 4.6 91.0 1.0 CB J:ASP353 4.7 97.4 1.0 N J:ARG365 4.8 84.9 1.0 CA J:ARG365 4.8 83.7 1.0 CD J:ARG363 4.8 111.0 1.0 CB J:ASP457 5.0 92.2 1.0

Magnesium binding site 10 out of 12 in the Structure of Sfpq-Nono Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Sfpq-Nono Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg602 b:45.6 occ:1.00 OE2 J:GLU389 2.7 86.3 1.0 OE1 I:GLU238 3.6 83.7 1.0 CD J:GLU389 3.6 82.3 1.0 OE1 J:GLU389 3.9 83.6 1.0 CD I:GLU238 3.9 82.6 1.0 OE2 I:GLU238 4.2 84.5 1.0 CB J:GLU385 4.4 67.9 1.0 CG I:GLU238 4.5 77.6 1.0 N J:LEU386 4.7 63.1 1.0 C J:GLU385 4.8 64.4 1.0 CA J:LEU386 4.9 62.5 1.0 CG J:GLU389 5.0 73.0 1.0

B.Schell, P.Legrand, S.Fribourg. Crystal Structure of Sfpq-Nono Heterodimer. Biochimie V. 198 1 2022.
ISSN: ISSN 0300-9084
PubMed: 35245601
DOI: 10.1016/J.BIOCHI.2022.02.011