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Magnesium in PDB 7pv7: Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.

Protein crystallography data

The structure of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator., PDB code: 7pv7 was solved by C.A.Schmitz, M.Madej, J.Potempa, M.Sola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.40 / 2.41
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 61.83, 77.08, 138.73, 82.26, 81.36, 76.41
R / Rfree (%) 18.6 / 21.6

Other elements in 7pv7:

The structure of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. also contains other interesting chemical elements:

Zinc (Zn) 6 atoms
Fluorine (F) 24 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. (pdb code 7pv7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator., PDB code: 7pv7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Magnesium binding site 1 out of 9 in 7pv7

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Magnesium binding site 1 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:28.9
occ:1.00
OD2 D:ASP58 1.8 55.8 1.0
O D:ASN60 1.9 70.9 1.0
F3 D:BEF601 2.0 32.7 1.0
OD1 D:ASP15 2.1 58.5 1.0
O D:HOH756 2.2 34.7 1.0
O D:HOH784 2.2 40.3 1.0
CG D:ASP58 2.9 50.8 1.0
CG D:ASP15 3.0 53.0 1.0
BE D:BEF601 3.1 33.5 1.0
C D:ASN60 3.1 64.7 1.0
OD1 D:ASP58 3.3 56.4 1.0
HB3 D:ASN60 3.3 77.4 1.0
OD2 D:ASP15 3.4 53.9 1.0
HG3 D:MSE61 3.5 72.2 1.0
HG2 D:MSE61 3.6 72.2 1.0
HA D:MSE61 3.7 74.3 1.0
H D:ASP15 3.7 63.2 1.0
H D:ASN60 3.8 66.2 1.0
OD1 D:ASP14 3.9 43.4 1.0
CA D:ASN60 3.9 61.8 1.0
CG D:MSE61 4.0 60.2 1.0
F1 D:BEF601 4.1 38.5 1.0
CB D:ASN60 4.1 64.5 1.0
N D:ASN60 4.1 55.2 1.0
HE3 D:LYS87 4.1 72.9 1.0
N D:MSE61 4.1 62.4 1.0
F2 D:BEF601 4.2 37.5 1.0
CB D:ASP58 4.2 45.3 1.0
HB3 D:ASP58 4.3 54.4 1.0
CA D:MSE61 4.3 61.9 1.0
CB D:ASP15 4.3 50.3 1.0
OE1 D:GLU16 4.4 51.4 1.0
HZ2 D:LYS87 4.4 77.5 1.0
HZ2 D:LYS108 4.4 54.7 1.0
HB3 D:ASP15 4.4 60.3 1.0
N D:ASP15 4.4 52.6 1.0
H D:GLU16 4.4 61.5 1.0
HG3 D:GLU16 4.5 61.4 1.0
HB2 D:ASP58 4.6 54.4 1.0
HZ1 D:LYS108 4.6 54.7 1.0
HZ3 D:LYS108 4.6 54.7 1.0
CG D:ASP14 4.6 42.6 1.0
HZ1 D:LYS87 4.7 77.5 1.0
CB D:MSE61 4.8 62.7 1.0
NZ D:LYS108 4.8 45.6 1.0
HB2 D:ASN60 4.8 77.4 1.0
HA D:ASP14 4.8 56.8 1.0
OD1 D:ASN60 4.8 69.2 1.0
HA D:ASN60 4.8 74.2 1.0
NZ D:LYS87 4.8 64.5 1.0
H D:GLU59 4.9 45.0 1.0
HD3 D:PRO62 4.9 66.1 1.0
CE D:LYS87 4.9 60.8 1.0
OD2 D:ASP14 4.9 39.1 1.0
H D:MSE61 4.9 74.8 1.0
CA D:ASP15 4.9 51.5 1.0
O D:HOH740 4.9 70.9 1.0
CG D:ASN60 4.9 69.4 1.0
HB2 D:GLU16 5.0 62.8 1.0

Magnesium binding site 2 out of 9 in 7pv7

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Magnesium binding site 2 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg606

b:83.8
occ:1.00
O D:HOH880 2.0 83.4 1.0
O D:HOH902 2.4 57.3 1.0
O D:HOH894 2.5 84.8 1.0
O D:MSE61 2.6 62.9 1.0
O D:HOH727 2.8 75.1 1.0
O D:GLY63 3.1 59.1 1.0
H D:MSE61 3.6 74.8 1.0
C D:MSE61 3.7 60.7 1.0
HA2 D:GLY65 3.9 63.8 1.0
HA D:PRO62 4.0 68.6 1.0
O D:HOH735 4.0 65.8 1.0
O D:HOH832 4.1 58.1 1.0
H D:GLY63 4.2 70.7 1.0
C D:GLY63 4.2 58.6 1.0
N D:MSE61 4.2 62.4 1.0
O D:HOH778 4.2 71.7 1.0
N D:GLY65 4.3 54.8 1.0
N D:GLY63 4.4 58.9 1.0
C D:ILE64 4.4 55.9 1.0
CA D:GLY65 4.5 53.1 1.0
HA3 D:GLY65 4.5 63.8 1.0
H D:GLY65 4.5 65.8 1.0
N D:PRO62 4.5 57.9 1.0
CA D:PRO62 4.6 57.1 1.0
O D:ILE64 4.6 55.2 1.0
CA D:MSE61 4.6 61.9 1.0
HA D:ASN60 4.6 74.2 1.0
HA D:ILE64 4.7 69.2 1.0
C D:PRO62 4.7 58.2 1.0
OD1 D:ASN60 4.9 69.2 1.0
CA D:GLY63 5.0 59.6 1.0
CA D:ILE64 5.0 57.7 1.0

Magnesium binding site 3 out of 9 in 7pv7

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Magnesium binding site 3 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:38.2
occ:1.00
OD1 C:ASP15 1.8 70.6 1.0
F1 C:BEF601 2.0 41.3 1.0
O C:HOH723 2.1 40.3 1.0
OD2 C:ASP58 2.2 70.5 1.0
O C:HOH781 2.3 84.5 1.0
O C:ASN60 2.4 53.8 1.0
CG C:ASP15 2.6 66.2 1.0
OD2 C:ASP15 2.8 67.5 1.0
CG C:ASP58 3.2 63.9 1.0
BE C:BEF601 3.2 39.1 1.0
HG3 C:GLU16 3.3 73.1 1.0
OD1 C:ASP14 3.5 58.6 1.0
H C:ASP15 3.5 70.5 1.0
OD1 C:ASP58 3.6 68.7 1.0
HB3 C:ASN60 3.6 76.4 1.0
HZ2 C:LYS87 3.6 75.4 1.0
C C:ASN60 3.6 58.9 1.0
OE2 C:GLU16 3.7 65.0 1.0
HG2 C:MSE61 3.9 73.9 1.0
CB C:ASP15 4.0 62.4 1.0
F2 C:BEF601 4.1 42.8 1.0
HG3 C:MSE61 4.1 73.9 1.0
HA C:MSE61 4.1 77.1 1.0
H C:GLU16 4.1 72.5 1.0
CG C:GLU16 4.2 60.9 1.0
H C:ASN60 4.2 74.3 1.0
N C:ASP15 4.2 58.8 1.0
HZ2 C:LYS108 4.3 63.6 1.0
HZ3 C:LYS108 4.3 63.6 1.0
CD C:GLU16 4.3 63.7 1.0
F3 C:BEF601 4.3 40.0 1.0
NZ C:LYS87 4.4 62.9 1.0
HB3 C:ASP15 4.4 74.8 1.0
HZ1 C:LYS87 4.4 75.4 1.0
CG C:ASP14 4.4 56.2 1.0
CB C:ASP58 4.4 56.7 1.0
CB C:ASN60 4.4 63.6 1.0
HZ1 C:LYS108 4.4 63.6 1.0
CA C:ASN60 4.4 61.5 1.0
HB3 C:ASP58 4.5 68.0 1.0
CG C:MSE61 4.5 61.6 1.0
HE3 C:LYS87 4.5 75.1 1.0
NZ C:LYS108 4.6 53.0 1.0
N C:ASN60 4.6 61.9 1.0
CA C:ASP15 4.6 60.4 1.0
HB2 C:ASP15 4.6 74.8 1.0
N C:MSE61 4.6 62.0 1.0
HB2 C:ASP58 4.6 68.0 1.0
N C:GLU16 4.7 60.5 1.0
HG2 C:GLU16 4.7 73.1 1.0
HA C:ASP14 4.8 65.4 1.0
OD2 C:ASP14 4.8 56.5 1.0
CA C:MSE61 4.8 64.3 1.0
O C:HOH905 4.8 67.1 1.0
HB2 C:GLU16 4.9 72.2 1.0
CE C:LYS87 5.0 62.6 1.0
C C:ASP15 5.0 60.6 1.0

Magnesium binding site 4 out of 9 in 7pv7

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Magnesium binding site 4 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg611

b:93.2
occ:1.00
O C:HOH853 2.3 73.5 1.0
O C:GLY63 2.8 67.7 1.0
O C:MSE61 3.0 68.0 1.0
H C:MSE61 3.7 74.3 1.0
HA2 C:GLY65 3.8 84.0 1.0
C C:GLY63 4.0 69.7 1.0
N C:GLY65 4.1 74.7 1.0
H C:GLY63 4.2 78.7 1.0
C C:MSE61 4.2 65.7 1.0
HA3 C:GLY65 4.2 84.0 1.0
C C:ILE64 4.2 77.8 1.0
CA C:GLY65 4.3 70.0 1.0
H C:GLY65 4.3 89.6 1.0
HA C:ILE64 4.5 94.3 1.0
O C:ILE64 4.5 78.7 1.0
N C:GLY63 4.5 65.6 1.0
N C:MSE61 4.5 62.0 1.0
HA C:ASN60 4.6 73.8 1.0
HA C:PRO62 4.6 75.8 1.0
CA C:ILE64 4.8 78.6 1.0
N C:ILE64 4.8 75.2 1.0
OD1 C:ASN60 4.9 72.5 1.0
CA C:GLY63 4.9 67.6 1.0

Magnesium binding site 5 out of 9 in 7pv7

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Magnesium binding site 5 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:26.4
occ:1.00
O B:ASN60 2.0 52.5 1.0
F2 B:BEF601 2.0 26.9 1.0
OD1 B:ASP15 2.0 47.8 1.0
O B:HOH753 2.1 27.7 1.0
OD2 B:ASP58 2.1 44.8 1.0
O B:HOH844 2.2 32.3 1.0
CG B:ASP15 2.9 45.6 1.0
OD2 B:ASP15 3.1 47.8 1.0
C B:ASN60 3.2 46.9 1.0
CG B:ASP58 3.2 41.3 1.0
BE B:BEF601 3.3 28.1 1.0
HB3 B:ASN60 3.5 53.4 1.0
OD1 B:ASP58 3.6 45.2 1.0
HG2 B:MSE61 3.6 58.5 1.0
HA B:MSE61 3.7 56.1 1.0
H B:ASP15 3.7 48.0 1.0
HG3 B:MSE61 3.8 58.5 1.0
H B:ASN60 3.8 54.1 1.0
OE2 B:GLU16 4.0 49.9 1.0
HZ2 B:LYS87 4.0 68.7 1.0
CA B:ASN60 4.0 42.6 1.0
CB B:ASN60 4.1 44.5 1.0
CG B:MSE61 4.1 48.7 1.0
F1 B:BEF601 4.2 32.5 1.0
N B:MSE61 4.2 47.9 1.0
OD1 B:ASP14 4.2 48.6 1.0
N B:ASN60 4.2 45.1 1.0
CB B:ASP15 4.2 42.0 1.0
F3 B:BEF601 4.3 30.6 1.0
CA B:MSE61 4.3 46.8 1.0
HB3 B:ASP15 4.4 50.4 1.0
HE3 B:LYS87 4.4 66.8 1.0
H B:GLU16 4.4 50.0 1.0
HG3 B:GLU16 4.5 57.6 1.0
HZ1 B:LYS87 4.5 68.7 1.0
N B:ASP15 4.5 40.0 1.0
CB B:ASP58 4.5 39.0 1.0
HB3 B:ASP58 4.5 46.9 1.0
HD22 B:ASN60 4.6 62.6 1.0
NZ B:LYS87 4.6 57.2 1.0
HZ2 B:LYS108 4.7 47.8 1.0
HZ3 B:LYS108 4.7 47.8 1.0
CG B:ASN60 4.7 47.1 1.0
CG B:ASP14 4.7 47.7 1.0
O B:HOH804 4.7 49.0 1.0
HD3 B:PRO62 4.8 57.3 1.0
ND2 B:ASN60 4.8 52.1 1.0
OD2 B:ASP14 4.8 46.6 1.0
CB B:MSE61 4.8 45.1 1.0
HB2 B:ASP58 4.9 46.9 1.0
HB2 B:ASP15 4.9 50.4 1.0
HB2 B:GLU16 4.9 55.2 1.0
HZ1 B:LYS108 4.9 47.8 1.0
CD B:GLU16 4.9 50.6 1.0
CA B:ASP15 4.9 41.1 1.0
HA B:ASN60 4.9 51.2 1.0
HB2 B:ASN60 5.0 53.4 1.0
NZ B:LYS108 5.0 39.8 1.0
H B:MSE61 5.0 57.4 1.0
N B:GLU16 5.0 41.7 1.0

Magnesium binding site 6 out of 9 in 7pv7

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Magnesium binding site 6 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg609

b:110.1
occ:1.00
O B:HOH818 2.3 66.6 1.0
O B:LEU468 2.4 96.7 1.0
O B:LYS456 2.6 48.0 1.0
O B:ASP470 2.7 64.1 1.0
HA B:ASP457 3.2 59.8 1.0
HD3 B:PRO458 3.3 59.5 1.0
HA B:SER469 3.3 87.6 1.0
C B:LEU468 3.4 92.2 1.0
HD2 B:PRO458 3.4 59.5 1.0
C B:SER469 3.6 68.7 1.0
C B:ASP470 3.6 69.2 1.0
N B:ASP470 3.8 68.9 1.0
CA B:SER469 3.8 73.0 1.0
C B:LYS456 3.8 48.4 1.0
CD B:PRO458 3.8 49.6 1.0
HG2 B:LYS471 3.9 99.5 1.0
O B:SER469 3.9 67.8 1.0
N B:SER469 4.0 81.7 1.0
H B:ASP470 4.0 82.7 1.0
HD1 B:HIS465 4.1 135.4 1.0
CA B:ASP457 4.1 49.8 1.0
HA B:LYS471 4.2 71.1 1.0
CA B:ASP470 4.3 70.0 1.0
HA B:LEU468 4.3 118.4 1.0
N B:ASP457 4.4 48.7 1.0
HE1 B:HIS465 4.4 134.4 1.0
CA B:LEU468 4.5 98.7 1.0
HG B:LEU468 4.5 118.7 1.0
N B:LYS471 4.5 52.8 1.0
HD23 B:LEU468 4.5 120.0 1.0
O B:ASN467 4.6 102.7 1.0
ND1 B:HIS465 4.6 112.8 1.0
CG B:LYS471 4.7 82.9 1.0
HG3 B:LYS471 4.7 99.5 1.0
HB2 B:ASP457 4.7 61.9 1.0
CE1 B:HIS465 4.8 112.0 1.0
CA B:LYS471 4.8 59.2 1.0
H B:SER469 4.8 98.0 1.0
HG2 B:PRO458 4.8 58.1 1.0
OD1 B:ASP457 4.8 53.4 1.0
HA B:LYS456 4.8 60.9 1.0
N B:PRO458 4.8 51.9 1.0
HB2 B:ASP470 4.8 84.6 1.0
CG B:PRO458 4.9 48.4 1.0
CB B:ASP457 4.9 51.5 1.0
CA B:LYS456 4.9 50.8 1.0

Magnesium binding site 7 out of 9 in 7pv7

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Magnesium binding site 7 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg610

b:59.0
occ:1.00
O B:MSE61 2.3 49.1 1.0
O B:HOH903 2.4 47.2 1.0
O B:GLY63 2.4 44.9 1.0
O B:HOH867 2.8 53.2 1.0
H B:MSE61 3.3 57.4 1.0
C B:MSE61 3.5 48.0 1.0
C B:GLY63 3.5 47.4 1.0
O B:HOH1044 3.6 58.1 1.0
HA2 B:GLY65 3.6 56.4 1.0
O B:ILE64 3.6 50.7 1.0
C B:ILE64 3.7 50.1 1.0
H B:GLY63 3.8 56.5 1.0
N B:GLY63 3.9 47.1 1.0
O B:HOH895 3.9 59.1 1.0
N B:GLY65 4.0 49.6 1.0
HA B:PRO62 4.0 57.5 1.0
N B:MSE61 4.0 47.9 1.0
HA B:ILE64 4.1 58.6 1.0
CA B:GLY65 4.2 47.0 1.0
N B:ILE64 4.3 47.7 1.0
C B:PRO62 4.3 47.1 1.0
CA B:ILE64 4.3 48.9 1.0
CA B:GLY63 4.3 46.5 1.0
CA B:MSE61 4.4 46.8 1.0
N B:PRO62 4.4 47.0 1.0
H B:GLY65 4.4 59.5 1.0
CA B:PRO62 4.4 47.9 1.0
HA3 B:GLY65 4.5 56.4 1.0
HB2 B:MSE61 4.6 54.1 1.0
OD1 B:ASN60 4.6 45.8 1.0
HA B:ASN60 4.6 51.2 1.0
HA2 B:GLY63 4.9 55.8 1.0
HA3 B:GLY63 5.0 55.8 1.0
O B:HOH772 5.0 35.9 1.0

Magnesium binding site 8 out of 9 in 7pv7

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Magnesium binding site 8 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:33.7
occ:1.00
OD2 A:ASP58 2.0 56.7 1.0
F2 A:BEF601 2.0 34.1 1.0
OD1 A:ASP15 2.0 60.3 1.0
O A:HOH802 2.1 49.8 1.0
O A:ASN60 2.2 68.1 1.0
O A:HOH731 2.2 37.7 1.0
CG A:ASP15 2.9 54.9 1.0
OD2 A:ASP15 3.0 56.5 1.0
CG A:ASP58 3.1 53.9 1.0
BE A:BEF601 3.2 36.1 1.0
C A:ASN60 3.4 58.0 1.0
HB3 A:ASN60 3.4 67.3 1.0
OD1 A:ASP58 3.7 56.0 1.0
H A:ASP15 3.7 59.8 1.0
HG3 A:MSE61 3.8 72.4 1.0
HG3 A:GLU16 3.8 64.8 1.0
HZ2 A:LYS87 3.9 65.6 1.0
HA A:MSE61 3.9 67.9 1.0
H A:ASN60 4.0 64.4 1.0
F1 A:BEF601 4.1 40.1 1.0
OD1 A:ASP14 4.1 36.6 1.0
CB A:ASN60 4.1 56.1 1.0
CA A:ASN60 4.2 54.1 1.0
HZ1 A:LYS87 4.2 65.6 1.0
H A:GLU16 4.2 58.4 1.0
HE3 A:LYS87 4.2 62.8 1.0
OE1 A:GLU16 4.3 58.3 1.0
HG2 A:MSE61 4.3 72.4 1.0
CB A:ASP15 4.3 50.5 1.0
F3 A:BEF601 4.3 38.7 1.0
N A:ASN60 4.3 53.7 1.0
HZ2 A:LYS108 4.3 40.5 1.0
HB3 A:ASP58 4.4 59.5 1.0
CB A:ASP58 4.4 49.6 1.0
N A:MSE61 4.4 55.9 1.0
N A:ASP15 4.4 49.9 1.0
NZ A:LYS87 4.4 54.7 1.0
CG A:MSE61 4.5 60.3 1.0
HB3 A:ASP15 4.6 60.6 1.0
CA A:MSE61 4.6 56.6 1.0
CG A:GLU16 4.6 54.0 1.0
CD A:GLU16 4.6 57.2 1.0
HB2 A:ASP58 4.7 59.5 1.0
CG A:ASP14 4.7 37.5 1.0
CG A:ASN60 4.7 59.2 1.0
OD1 A:ASN60 4.7 59.2 1.0
HZ1 A:LYS108 4.8 40.5 1.0
N A:GLU16 4.8 48.7 1.0
OD2 A:ASP14 4.8 35.3 1.0
HB2 A:GLU16 4.8 61.2 1.0
HD3 A:PRO62 4.9 72.9 1.0
CA A:ASP15 4.9 48.6 1.0
HZ3 A:LYS108 4.9 40.5 1.0
CE A:LYS87 4.9 52.3 1.0
NZ A:LYS108 4.9 33.8 1.0
HA A:ASP14 4.9 54.7 1.0
HB2 A:ASP15 4.9 60.6 1.0
HB2 A:ASN60 4.9 67.3 1.0

Magnesium binding site 9 out of 9 in 7pv7

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Magnesium binding site 9 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg611

b:78.6
occ:1.00
O A:GLY63 2.5 59.2 1.0
O A:HOH927 2.8 60.5 1.0
O A:MSE61 3.1 56.7 1.0
HA2 A:GLY65 3.6 65.8 1.0
N A:GLY65 3.7 57.2 1.0
H A:GLY65 3.7 68.7 1.0
C A:GLY63 3.7 59.9 1.0
HA3 A:GLY65 3.9 65.8 1.0
CA A:GLY65 3.9 54.9 1.0
C A:ILE64 4.0 59.3 1.0
H A:GLY63 4.1 72.9 1.0
H A:MSE61 4.1 67.1 1.0
HA A:ILE64 4.3 72.8 1.0
O A:HOH911 4.3 60.1 1.0
N A:GLY63 4.3 60.8 1.0
C A:MSE61 4.3 56.3 1.0
O A:ILE64 4.4 59.8 1.0
CA A:ILE64 4.5 60.7 1.0
HA A:PRO62 4.5 72.5 1.0
N A:ILE64 4.6 60.0 1.0
CA A:GLY63 4.6 59.4 1.0
N A:MSE61 4.8 55.9 1.0
C A:PRO62 4.9 58.5 1.0

Reference:

C.Schmitz, M.Madej, Z.Nowakowska, A.Cuppari, A.Jacula, M.Ksiazek, K.Mikruta, J.Wisniewski, N.Pudelko-Malik, A.Saran, N.Zeytuni, P.Mlynarz, R.J.Lamont, I.Uson, V.Siksnys, J.Potempa, M.Sola. Response Regulator Porx Coordinates Oligonucleotide Signalling and Gene Expression to Control the Secretion of Virulence Factors. Nucleic Acids Res. V. 50 12558 2022.
ISSN: ESSN 1362-4962
PubMed: 36464236
DOI: 10.1093/NAR/GKAC1103
Page generated: Thu Oct 3 04:46:57 2024

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