Atomistry » Magnesium » PDB 7psm-7q03 » 7pv7
Atomistry »
  Magnesium »
    PDB 7psm-7q03 »
      7pv7 »

Magnesium in PDB 7pv7: Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.

Protein crystallography data

The structure of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator., PDB code: 7pv7 was solved by C.A.Schmitz, M.Madej, J.Potempa, M.Sola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.40 / 2.41
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 61.83, 77.08, 138.73, 82.26, 81.36, 76.41
R / Rfree (%) 18.6 / 21.6

Other elements in 7pv7:

The structure of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. also contains other interesting chemical elements:

Zinc (Zn) 6 atoms
Fluorine (F) 24 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. (pdb code 7pv7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator., PDB code: 7pv7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Magnesium binding site 1 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 1 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:28.9
occ:1.00
OD2 D:ASP58 1.8 55.8 1.0
O D:ASN60 1.9 70.9 1.0
F3 D:BEF601 2.0 32.7 1.0
OD1 D:ASP15 2.1 58.5 1.0
O D:HOH756 2.2 34.7 1.0
O D:HOH784 2.2 40.3 1.0
CG D:ASP58 2.9 50.8 1.0
CG D:ASP15 3.0 53.0 1.0
BE D:BEF601 3.1 33.5 1.0
C D:ASN60 3.1 64.7 1.0
OD1 D:ASP58 3.3 56.4 1.0
HB3 D:ASN60 3.3 77.4 1.0
OD2 D:ASP15 3.4 53.9 1.0
HG3 D:MSE61 3.5 72.2 1.0
HG2 D:MSE61 3.6 72.2 1.0
HA D:MSE61 3.7 74.3 1.0
H D:ASP15 3.7 63.2 1.0
H D:ASN60 3.8 66.2 1.0
OD1 D:ASP14 3.9 43.4 1.0
CA D:ASN60 3.9 61.8 1.0
CG D:MSE61 4.0 60.2 1.0
F1 D:BEF601 4.1 38.5 1.0
CB D:ASN60 4.1 64.5 1.0
N D:ASN60 4.1 55.2 1.0
HE3 D:LYS87 4.1 72.9 1.0
N D:MSE61 4.1 62.4 1.0
F2 D:BEF601 4.2 37.5 1.0
CB D:ASP58 4.2 45.3 1.0
HB3 D:ASP58 4.3 54.4 1.0
CA D:MSE61 4.3 61.9 1.0
CB D:ASP15 4.3 50.3 1.0
OE1 D:GLU16 4.4 51.4 1.0
HZ2 D:LYS87 4.4 77.5 1.0
HZ2 D:LYS108 4.4 54.7 1.0
HB3 D:ASP15 4.4 60.3 1.0
N D:ASP15 4.4 52.6 1.0
H D:GLU16 4.4 61.5 1.0
HG3 D:GLU16 4.5 61.4 1.0
HB2 D:ASP58 4.6 54.4 1.0
HZ1 D:LYS108 4.6 54.7 1.0
HZ3 D:LYS108 4.6 54.7 1.0
CG D:ASP14 4.6 42.6 1.0
HZ1 D:LYS87 4.7 77.5 1.0
CB D:MSE61 4.8 62.7 1.0
NZ D:LYS108 4.8 45.6 1.0
HB2 D:ASN60 4.8 77.4 1.0
HA D:ASP14 4.8 56.8 1.0
OD1 D:ASN60 4.8 69.2 1.0
HA D:ASN60 4.8 74.2 1.0
NZ D:LYS87 4.8 64.5 1.0
H D:GLU59 4.9 45.0 1.0
HD3 D:PRO62 4.9 66.1 1.0
CE D:LYS87 4.9 60.8 1.0
OD2 D:ASP14 4.9 39.1 1.0
H D:MSE61 4.9 74.8 1.0
CA D:ASP15 4.9 51.5 1.0
O D:HOH740 4.9 70.9 1.0
CG D:ASN60 4.9 69.4 1.0
HB2 D:GLU16 5.0 62.8 1.0

Magnesium binding site 2 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 2 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg606

b:83.8
occ:1.00
O D:HOH880 2.0 83.4 1.0
O D:HOH902 2.4 57.3 1.0
O D:HOH894 2.5 84.8 1.0
O D:MSE61 2.6 62.9 1.0
O D:HOH727 2.8 75.1 1.0
O D:GLY63 3.1 59.1 1.0
H D:MSE61 3.6 74.8 1.0
C D:MSE61 3.7 60.7 1.0
HA2 D:GLY65 3.9 63.8 1.0
HA D:PRO62 4.0 68.6 1.0
O D:HOH735 4.0 65.8 1.0
O D:HOH832 4.1 58.1 1.0
H D:GLY63 4.2 70.7 1.0
C D:GLY63 4.2 58.6 1.0
N D:MSE61 4.2 62.4 1.0
O D:HOH778 4.2 71.7 1.0
N D:GLY65 4.3 54.8 1.0
N D:GLY63 4.4 58.9 1.0
C D:ILE64 4.4 55.9 1.0
CA D:GLY65 4.5 53.1 1.0
HA3 D:GLY65 4.5 63.8 1.0
H D:GLY65 4.5 65.8 1.0
N D:PRO62 4.5 57.9 1.0
CA D:PRO62 4.6 57.1 1.0
O D:ILE64 4.6 55.2 1.0
CA D:MSE61 4.6 61.9 1.0
HA D:ASN60 4.6 74.2 1.0
HA D:ILE64 4.7 69.2 1.0
C D:PRO62 4.7 58.2 1.0
OD1 D:ASN60 4.9 69.2 1.0
CA D:GLY63 5.0 59.6 1.0
CA D:ILE64 5.0 57.7 1.0

Magnesium binding site 3 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 3 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:38.2
occ:1.00
OD1 C:ASP15 1.8 70.6 1.0
F1 C:BEF601 2.0 41.3 1.0
O C:HOH723 2.1 40.3 1.0
OD2 C:ASP58 2.2 70.5 1.0
O C:HOH781 2.3 84.5 1.0
O C:ASN60 2.4 53.8 1.0
CG C:ASP15 2.6 66.2 1.0
OD2 C:ASP15 2.8 67.5 1.0
CG C:ASP58 3.2 63.9 1.0
BE C:BEF601 3.2 39.1 1.0
HG3 C:GLU16 3.3 73.1 1.0
OD1 C:ASP14 3.5 58.6 1.0
H C:ASP15 3.5 70.5 1.0
OD1 C:ASP58 3.6 68.7 1.0
HB3 C:ASN60 3.6 76.4 1.0
HZ2 C:LYS87 3.6 75.4 1.0
C C:ASN60 3.6 58.9 1.0
OE2 C:GLU16 3.7 65.0 1.0
HG2 C:MSE61 3.9 73.9 1.0
CB C:ASP15 4.0 62.4 1.0
F2 C:BEF601 4.1 42.8 1.0
HG3 C:MSE61 4.1 73.9 1.0
HA C:MSE61 4.1 77.1 1.0
H C:GLU16 4.1 72.5 1.0
CG C:GLU16 4.2 60.9 1.0
H C:ASN60 4.2 74.3 1.0
N C:ASP15 4.2 58.8 1.0
HZ2 C:LYS108 4.3 63.6 1.0
HZ3 C:LYS108 4.3 63.6 1.0
CD C:GLU16 4.3 63.7 1.0
F3 C:BEF601 4.3 40.0 1.0
NZ C:LYS87 4.4 62.9 1.0
HB3 C:ASP15 4.4 74.8 1.0
HZ1 C:LYS87 4.4 75.4 1.0
CG C:ASP14 4.4 56.2 1.0
CB C:ASP58 4.4 56.7 1.0
CB C:ASN60 4.4 63.6 1.0
HZ1 C:LYS108 4.4 63.6 1.0
CA C:ASN60 4.4 61.5 1.0
HB3 C:ASP58 4.5 68.0 1.0
CG C:MSE61 4.5 61.6 1.0
HE3 C:LYS87 4.5 75.1 1.0
NZ C:LYS108 4.6 53.0 1.0
N C:ASN60 4.6 61.9 1.0
CA C:ASP15 4.6 60.4 1.0
HB2 C:ASP15 4.6 74.8 1.0
N C:MSE61 4.6 62.0 1.0
HB2 C:ASP58 4.6 68.0 1.0
N C:GLU16 4.7 60.5 1.0
HG2 C:GLU16 4.7 73.1 1.0
HA C:ASP14 4.8 65.4 1.0
OD2 C:ASP14 4.8 56.5 1.0
CA C:MSE61 4.8 64.3 1.0
O C:HOH905 4.8 67.1 1.0
HB2 C:GLU16 4.9 72.2 1.0
CE C:LYS87 5.0 62.6 1.0
C C:ASP15 5.0 60.6 1.0

Magnesium binding site 4 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 4 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg611

b:93.2
occ:1.00
O C:HOH853 2.3 73.5 1.0
O C:GLY63 2.8 67.7 1.0
O C:MSE61 3.0 68.0 1.0
H C:MSE61 3.7 74.3 1.0
HA2 C:GLY65 3.8 84.0 1.0
C C:GLY63 4.0 69.7 1.0
N C:GLY65 4.1 74.7 1.0
H C:GLY63 4.2 78.7 1.0
C C:MSE61 4.2 65.7 1.0
HA3 C:GLY65 4.2 84.0 1.0
C C:ILE64 4.2 77.8 1.0
CA C:GLY65 4.3 70.0 1.0
H C:GLY65 4.3 89.6 1.0
HA C:ILE64 4.5 94.3 1.0
O C:ILE64 4.5 78.7 1.0
N C:GLY63 4.5 65.6 1.0
N C:MSE61 4.5 62.0 1.0
HA C:ASN60 4.6 73.8 1.0
HA C:PRO62 4.6 75.8 1.0
CA C:ILE64 4.8 78.6 1.0
N C:ILE64 4.8 75.2 1.0
OD1 C:ASN60 4.9 72.5 1.0
CA C:GLY63 4.9 67.6 1.0

Magnesium binding site 5 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 5 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:26.4
occ:1.00
O B:ASN60 2.0 52.5 1.0
F2 B:BEF601 2.0 26.9 1.0
OD1 B:ASP15 2.0 47.8 1.0
O B:HOH753 2.1 27.7 1.0
OD2 B:ASP58 2.1 44.8 1.0
O B:HOH844 2.2 32.3 1.0
CG B:ASP15 2.9 45.6 1.0
OD2 B:ASP15 3.1 47.8 1.0
C B:ASN60 3.2 46.9 1.0
CG B:ASP58 3.2 41.3 1.0
BE B:BEF601 3.3 28.1 1.0
HB3 B:ASN60 3.5 53.4 1.0
OD1 B:ASP58 3.6 45.2 1.0
HG2 B:MSE61 3.6 58.5 1.0
HA B:MSE61 3.7 56.1 1.0
H B:ASP15 3.7 48.0 1.0
HG3 B:MSE61 3.8 58.5 1.0
H B:ASN60 3.8 54.1 1.0
OE2 B:GLU16 4.0 49.9 1.0
HZ2 B:LYS87 4.0 68.7 1.0
CA B:ASN60 4.0 42.6 1.0
CB B:ASN60 4.1 44.5 1.0
CG B:MSE61 4.1 48.7 1.0
F1 B:BEF601 4.2 32.5 1.0
N B:MSE61 4.2 47.9 1.0
OD1 B:ASP14 4.2 48.6 1.0
N B:ASN60 4.2 45.1 1.0
CB B:ASP15 4.2 42.0 1.0
F3 B:BEF601 4.3 30.6 1.0
CA B:MSE61 4.3 46.8 1.0
HB3 B:ASP15 4.4 50.4 1.0
HE3 B:LYS87 4.4 66.8 1.0
H B:GLU16 4.4 50.0 1.0
HG3 B:GLU16 4.5 57.6 1.0
HZ1 B:LYS87 4.5 68.7 1.0
N B:ASP15 4.5 40.0 1.0
CB B:ASP58 4.5 39.0 1.0
HB3 B:ASP58 4.5 46.9 1.0
HD22 B:ASN60 4.6 62.6 1.0
NZ B:LYS87 4.6 57.2 1.0
HZ2 B:LYS108 4.7 47.8 1.0
HZ3 B:LYS108 4.7 47.8 1.0
CG B:ASN60 4.7 47.1 1.0
CG B:ASP14 4.7 47.7 1.0
O B:HOH804 4.7 49.0 1.0
HD3 B:PRO62 4.8 57.3 1.0
ND2 B:ASN60 4.8 52.1 1.0
OD2 B:ASP14 4.8 46.6 1.0
CB B:MSE61 4.8 45.1 1.0
HB2 B:ASP58 4.9 46.9 1.0
HB2 B:ASP15 4.9 50.4 1.0
HB2 B:GLU16 4.9 55.2 1.0
HZ1 B:LYS108 4.9 47.8 1.0
CD B:GLU16 4.9 50.6 1.0
CA B:ASP15 4.9 41.1 1.0
HA B:ASN60 4.9 51.2 1.0
HB2 B:ASN60 5.0 53.4 1.0
NZ B:LYS108 5.0 39.8 1.0
H B:MSE61 5.0 57.4 1.0
N B:GLU16 5.0 41.7 1.0

Magnesium binding site 6 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 6 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg609

b:110.1
occ:1.00
O B:HOH818 2.3 66.6 1.0
O B:LEU468 2.4 96.7 1.0
O B:LYS456 2.6 48.0 1.0
O B:ASP470 2.7 64.1 1.0
HA B:ASP457 3.2 59.8 1.0
HD3 B:PRO458 3.3 59.5 1.0
HA B:SER469 3.3 87.6 1.0
C B:LEU468 3.4 92.2 1.0
HD2 B:PRO458 3.4 59.5 1.0
C B:SER469 3.6 68.7 1.0
C B:ASP470 3.6 69.2 1.0
N B:ASP470 3.8 68.9 1.0
CA B:SER469 3.8 73.0 1.0
C B:LYS456 3.8 48.4 1.0
CD B:PRO458 3.8 49.6 1.0
HG2 B:LYS471 3.9 99.5 1.0
O B:SER469 3.9 67.8 1.0
N B:SER469 4.0 81.7 1.0
H B:ASP470 4.0 82.7 1.0
HD1 B:HIS465 4.1 135.4 1.0
CA B:ASP457 4.1 49.8 1.0
HA B:LYS471 4.2 71.1 1.0
CA B:ASP470 4.3 70.0 1.0
HA B:LEU468 4.3 118.4 1.0
N B:ASP457 4.4 48.7 1.0
HE1 B:HIS465 4.4 134.4 1.0
CA B:LEU468 4.5 98.7 1.0
HG B:LEU468 4.5 118.7 1.0
N B:LYS471 4.5 52.8 1.0
HD23 B:LEU468 4.5 120.0 1.0
O B:ASN467 4.6 102.7 1.0
ND1 B:HIS465 4.6 112.8 1.0
CG B:LYS471 4.7 82.9 1.0
HG3 B:LYS471 4.7 99.5 1.0
HB2 B:ASP457 4.7 61.9 1.0
CE1 B:HIS465 4.8 112.0 1.0
CA B:LYS471 4.8 59.2 1.0
H B:SER469 4.8 98.0 1.0
HG2 B:PRO458 4.8 58.1 1.0
OD1 B:ASP457 4.8 53.4 1.0
HA B:LYS456 4.8 60.9 1.0
N B:PRO458 4.8 51.9 1.0
HB2 B:ASP470 4.8 84.6 1.0
CG B:PRO458 4.9 48.4 1.0
CB B:ASP457 4.9 51.5 1.0
CA B:LYS456 4.9 50.8 1.0

Magnesium binding site 7 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 7 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg610

b:59.0
occ:1.00
O B:MSE61 2.3 49.1 1.0
O B:HOH903 2.4 47.2 1.0
O B:GLY63 2.4 44.9 1.0
O B:HOH867 2.8 53.2 1.0
H B:MSE61 3.3 57.4 1.0
C B:MSE61 3.5 48.0 1.0
C B:GLY63 3.5 47.4 1.0
O B:HOH1044 3.6 58.1 1.0
HA2 B:GLY65 3.6 56.4 1.0
O B:ILE64 3.6 50.7 1.0
C B:ILE64 3.7 50.1 1.0
H B:GLY63 3.8 56.5 1.0
N B:GLY63 3.9 47.1 1.0
O B:HOH895 3.9 59.1 1.0
N B:GLY65 4.0 49.6 1.0
HA B:PRO62 4.0 57.5 1.0
N B:MSE61 4.0 47.9 1.0
HA B:ILE64 4.1 58.6 1.0
CA B:GLY65 4.2 47.0 1.0
N B:ILE64 4.3 47.7 1.0
C B:PRO62 4.3 47.1 1.0
CA B:ILE64 4.3 48.9 1.0
CA B:GLY63 4.3 46.5 1.0
CA B:MSE61 4.4 46.8 1.0
N B:PRO62 4.4 47.0 1.0
H B:GLY65 4.4 59.5 1.0
CA B:PRO62 4.4 47.9 1.0
HA3 B:GLY65 4.5 56.4 1.0
HB2 B:MSE61 4.6 54.1 1.0
OD1 B:ASN60 4.6 45.8 1.0
HA B:ASN60 4.6 51.2 1.0
HA2 B:GLY63 4.9 55.8 1.0
HA3 B:GLY63 5.0 55.8 1.0
O B:HOH772 5.0 35.9 1.0

Magnesium binding site 8 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 8 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:33.7
occ:1.00
OD2 A:ASP58 2.0 56.7 1.0
F2 A:BEF601 2.0 34.1 1.0
OD1 A:ASP15 2.0 60.3 1.0
O A:HOH802 2.1 49.8 1.0
O A:ASN60 2.2 68.1 1.0
O A:HOH731 2.2 37.7 1.0
CG A:ASP15 2.9 54.9 1.0
OD2 A:ASP15 3.0 56.5 1.0
CG A:ASP58 3.1 53.9 1.0
BE A:BEF601 3.2 36.1 1.0
C A:ASN60 3.4 58.0 1.0
HB3 A:ASN60 3.4 67.3 1.0
OD1 A:ASP58 3.7 56.0 1.0
H A:ASP15 3.7 59.8 1.0
HG3 A:MSE61 3.8 72.4 1.0
HG3 A:GLU16 3.8 64.8 1.0
HZ2 A:LYS87 3.9 65.6 1.0
HA A:MSE61 3.9 67.9 1.0
H A:ASN60 4.0 64.4 1.0
F1 A:BEF601 4.1 40.1 1.0
OD1 A:ASP14 4.1 36.6 1.0
CB A:ASN60 4.1 56.1 1.0
CA A:ASN60 4.2 54.1 1.0
HZ1 A:LYS87 4.2 65.6 1.0
H A:GLU16 4.2 58.4 1.0
HE3 A:LYS87 4.2 62.8 1.0
OE1 A:GLU16 4.3 58.3 1.0
HG2 A:MSE61 4.3 72.4 1.0
CB A:ASP15 4.3 50.5 1.0
F3 A:BEF601 4.3 38.7 1.0
N A:ASN60 4.3 53.7 1.0
HZ2 A:LYS108 4.3 40.5 1.0
HB3 A:ASP58 4.4 59.5 1.0
CB A:ASP58 4.4 49.6 1.0
N A:MSE61 4.4 55.9 1.0
N A:ASP15 4.4 49.9 1.0
NZ A:LYS87 4.4 54.7 1.0
CG A:MSE61 4.5 60.3 1.0
HB3 A:ASP15 4.6 60.6 1.0
CA A:MSE61 4.6 56.6 1.0
CG A:GLU16 4.6 54.0 1.0
CD A:GLU16 4.6 57.2 1.0
HB2 A:ASP58 4.7 59.5 1.0
CG A:ASP14 4.7 37.5 1.0
CG A:ASN60 4.7 59.2 1.0
OD1 A:ASN60 4.7 59.2 1.0
HZ1 A:LYS108 4.8 40.5 1.0
N A:GLU16 4.8 48.7 1.0
OD2 A:ASP14 4.8 35.3 1.0
HB2 A:GLU16 4.8 61.2 1.0
HD3 A:PRO62 4.9 72.9 1.0
CA A:ASP15 4.9 48.6 1.0
HZ3 A:LYS108 4.9 40.5 1.0
CE A:LYS87 4.9 52.3 1.0
NZ A:LYS108 4.9 33.8 1.0
HA A:ASP14 4.9 54.7 1.0
HB2 A:ASP15 4.9 60.6 1.0
HB2 A:ASN60 4.9 67.3 1.0

Magnesium binding site 9 out of 9 in 7pv7

Go back to Magnesium Binding Sites List in 7pv7
Magnesium binding site 9 out of 9 in the Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Dimeric Porphyromonas Gingivalis Porx, A Type 9 Secretion System Response Regulator. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg611

b:78.6
occ:1.00
O A:GLY63 2.5 59.2 1.0
O A:HOH927 2.8 60.5 1.0
O A:MSE61 3.1 56.7 1.0
HA2 A:GLY65 3.6 65.8 1.0
N A:GLY65 3.7 57.2 1.0
H A:GLY65 3.7 68.7 1.0
C A:GLY63 3.7 59.9 1.0
HA3 A:GLY65 3.9 65.8 1.0
CA A:GLY65 3.9 54.9 1.0
C A:ILE64 4.0 59.3 1.0
H A:GLY63 4.1 72.9 1.0
H A:MSE61 4.1 67.1 1.0
HA A:ILE64 4.3 72.8 1.0
O A:HOH911 4.3 60.1 1.0
N A:GLY63 4.3 60.8 1.0
C A:MSE61 4.3 56.3 1.0
O A:ILE64 4.4 59.8 1.0
CA A:ILE64 4.5 60.7 1.0
HA A:PRO62 4.5 72.5 1.0
N A:ILE64 4.6 60.0 1.0
CA A:GLY63 4.6 59.4 1.0
N A:MSE61 4.8 55.9 1.0
C A:PRO62 4.9 58.5 1.0

Reference:

C.Schmitz, M.Madej, Z.Nowakowska, A.Cuppari, A.Jacula, M.Ksiazek, K.Mikruta, J.Wisniewski, N.Pudelko-Malik, A.Saran, N.Zeytuni, P.Mlynarz, R.J.Lamont, I.Uson, V.Siksnys, J.Potempa, M.Sola. Response Regulator Porx Coordinates Oligonucleotide Signalling and Gene Expression to Control the Secretion of Virulence Factors. Nucleic Acids Res. V. 50 12558 2022.
ISSN: ESSN 1362-4962
PubMed: 36464236
DOI: 10.1093/NAR/GKAC1103
Page generated: Thu Oct 3 04:46:57 2024

Last articles

Mn in 2NYM
Mn in 2NYL
Mn in 2NPP
Mn in 2NW9
Mn in 2NOK
Mn in 2KY8
Mn in 2NS6
Mn in 2NRZ
Mn in 2NW8
Mn in 2NVY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy