Magnesium in PDB 7pva: 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc

The structure of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc, PDB code: 7pva was solved by C.A.Schmitz, M.Madej, J.Potempa, M.Sola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	68.59 / 1.91
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	61.48, 77.29, 138.83, 82.42, 81.61, 76.51
R / Rfree (%)	15.9 / 19.2

The structure of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc also contains other interesting chemical elements:

Fluorine	(F)	24 atoms
Chlorine	(Cl)	2 atoms
Zinc	(Zn)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Magnesium atom in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc (pdb code 7pva). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 11 binding sites of Magnesium where determined in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc, PDB code: 7pva:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:43.1 occ:1.00 F1 A:BEF602 2.0 36.6 1.0 O A:HOH872 2.0 40.6 1.0 OD2 A:ASP58 2.0 45.5 1.0 OD1 A:ASP15 2.1 55.1 1.0 O A:HOH920 2.1 44.1 1.0 O A:ASN60 2.2 46.0 1.0 CG A:ASP58 3.0 42.8 1.0 BE A:BEF602 3.0 34.5 1.0 CG A:ASP15 3.1 56.5 1.0 OD1 A:ASP58 3.3 39.4 1.0 C A:ASN60 3.3 37.5 1.0 OD2 A:ASP15 3.4 56.9 1.0 HB3 A:ASN60 3.4 50.8 1.0 H A:ASP15 3.8 53.7 1.0 H A:ASN60 3.8 43.6 1.0 HG3 A:MSE61 3.8 54.8 1.0 F2 A:BEF602 4.0 37.6 1.0 O A:HOH980 4.0 56.3 1.0 HA A:MSE61 4.0 52.7 1.0 OD1 A:ASP14 4.0 40.2 1.0 HG2 A:MSE61 4.1 54.8 1.0 HG3 A:GLU16 4.1 54.9 1.0 HZ2 A:LYS87 4.1 76.1 1.0 CA A:ASN60 4.1 37.6 1.0 F3 A:BEF602 4.1 39.7 1.0 CB A:ASN60 4.2 42.3 1.0 HZ2 A:LYS108 4.2 55.9 1.0 OE1 A:GLU16 4.2 46.7 1.0 N A:ASN60 4.2 36.3 1.0 CB A:ASP58 4.3 37.1 1.0 N A:MSE61 4.4 43.6 1.0 HB3 A:ASP58 4.4 44.6 1.0 CG A:MSE61 4.4 45.7 1.0 HE3 A:LYS87 4.5 72.1 1.0 HZ1 A:LYS108 4.5 55.9 1.0 CB A:ASP15 4.5 52.1 1.0 N A:ASP15 4.5 44.7 1.0 H A:GLU16 4.5 56.2 1.0 HZ1 A:LYS87 4.5 76.1 1.0 HB2 A:ASP58 4.6 44.6 1.0 CG A:ASP14 4.6 41.9 1.0 CA A:MSE61 4.6 43.9 1.0 NZ A:LYS87 4.7 63.4 1.0 NZ A:LYS108 4.7 46.5 1.0 HB2 A:GLU16 4.7 57.5 1.0 OD2 A:ASP14 4.7 39.6 1.0 HB3 A:ASP15 4.7 62.5 1.0 O A:HOH933 4.8 66.0 1.0 CD A:GLU16 4.8 45.7 1.0 CG A:GLU16 4.8 45.7 1.0 HZ3 A:LYS108 4.9 55.9 1.0 HA A:ASP14 4.9 50.4 1.0 CG A:ASN60 4.9 47.3 1.0 HB2 A:ASN60 4.9 50.8 1.0 H A:GLU59 5.0 47.9 1.0

Magnesium binding site 2 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg612 b:101.1 occ:1.00 O A:MSE61 2.3 53.0 1.0 O A:HOH883 2.4 102.9 1.0 O A:GLY63 2.8 62.6 1.0 O A:HOH1075 2.9 54.9 1.0 H A:GLY63 3.2 70.8 1.0 O A:HOH1047 3.3 80.5 1.0 C A:MSE61 3.4 50.6 1.0 HA A:PRO62 3.4 69.5 1.0 N A:GLY63 3.5 59.0 1.0 H A:MSE61 3.6 52.4 1.0 C A:GLY63 3.7 61.0 1.0 HA2 A:GLY65 3.9 62.5 1.0 CA A:PRO62 3.9 57.9 1.0 C A:PRO62 4.0 57.9 1.0 N A:PRO62 4.1 52.6 1.0 CA A:GLY63 4.3 58.4 1.0 N A:MSE61 4.3 43.6 1.0 N A:GLY65 4.3 58.0 1.0 C A:ILE64 4.3 57.9 1.0 O A:ILE64 4.4 55.1 1.0 CA A:GLY65 4.5 52.0 1.0 CA A:MSE61 4.5 43.9 1.0 HA3 A:GLY65 4.5 62.5 1.0 H A:GLY65 4.5 69.6 1.0 N A:ILE64 4.7 60.7 1.0 OD1 A:ASN60 4.7 51.4 1.0 HA A:ILE64 4.7 74.0 1.0 HA2 A:GLY63 4.8 70.1 1.0 HA A:ASN60 4.8 45.1 1.0 O A:PRO62 4.8 55.5 1.0 CA A:ILE64 4.9 61.6 1.0 O A:HOH758 4.9 60.9 1.0 HB2 A:MSE61 5.0 50.8 1.0 HA3 A:GLY63 5.0 70.1 1.0

Magnesium binding site 3 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:40.5 occ:1.00 F1 B:BEF602 1.7 30.5 1.0 O B:HOH828 2.0 34.1 1.0 O B:HOH852 2.0 33.1 1.0 OD1 B:ASP15 2.0 38.0 1.0 OD2 B:ASP58 2.1 34.4 1.0 O B:ASN60 2.1 33.5 1.0 BE B:BEF602 2.9 28.9 1.0 CG B:ASP58 3.0 30.4 1.0 CG B:ASP15 3.1 39.0 1.0 C B:ASN60 3.3 33.4 1.0 OD1 B:ASP58 3.3 32.8 1.0 OD2 B:ASP15 3.4 37.2 1.0 HB3 B:ASN60 3.5 42.5 1.0 HE3 B:LYS87 3.6 61.8 1.0 HG2 B:MSE61 3.6 51.2 1.0 H B:ASN60 3.8 46.3 1.0 H B:ASP15 3.8 43.3 1.0 HA B:MSE61 3.9 40.2 1.0 HG3 B:GLU16 3.9 55.2 1.0 OD1 B:ASP14 4.0 36.0 1.0 F2 B:BEF602 4.0 32.5 1.0 OE2 B:GLU16 4.1 49.5 1.0 F3 B:BEF602 4.1 32.6 1.0 CA B:ASN60 4.1 34.2 1.0 HZ2 B:LYS108 4.1 49.8 1.0 CB B:ASN60 4.2 35.4 1.0 HZ1 B:LYS87 4.2 73.6 1.0 N B:ASN60 4.2 38.5 1.0 HG3 B:MSE61 4.3 51.2 1.0 N B:MSE61 4.3 41.0 1.0 CB B:ASP58 4.3 31.0 1.0 CG B:MSE61 4.4 42.7 1.0 HB3 B:ASP58 4.4 37.2 1.0 H B:GLU16 4.4 46.7 1.0 CE B:LYS87 4.4 51.5 1.0 N B:ASP15 4.5 36.1 1.0 HZ1 B:LYS108 4.5 49.8 1.0 CB B:ASP15 4.5 38.9 1.0 CA B:MSE61 4.5 33.5 1.0 CG B:ASP14 4.6 39.2 1.0 HZ2 B:LYS87 4.6 73.6 1.0 HB2 B:ASP58 4.6 37.2 1.0 NZ B:LYS87 4.6 61.3 1.0 OD2 B:ASP14 4.6 32.1 1.0 NZ B:LYS108 4.7 41.5 1.0 CG B:GLU16 4.7 46.0 1.0 O B:HOH939 4.7 61.1 1.0 CD B:GLU16 4.7 49.5 1.0 HB3 B:ASP15 4.8 46.7 1.0 HZ3 B:LYS108 4.8 49.8 1.0 HE2 B:LYS87 4.8 61.8 1.0 HA B:ASP14 4.9 37.8 1.0 CG B:ASN60 4.9 47.7 1.0 O B:HOH841 4.9 77.7 1.0 N B:GLU16 5.0 38.9 1.0 HB2 B:GLU16 5.0 50.9 1.0 HB2 B:ASN60 5.0 42.5 1.0 H B:GLU59 5.0 40.0 1.0 HD22 B:ASN60 5.0 63.9 1.0

Magnesium binding site 4 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg616 b:66.6 occ:1.00 O B:HOH1093 2.1 65.4 1.0 O B:GLY63 2.3 43.6 1.0 O B:MSE61 2.4 42.7 1.0 O B:HOH1058 2.4 44.8 1.0 O B:HOH1108 2.6 65.9 1.0 C B:GLY63 3.4 42.0 1.0 H B:MSE61 3.5 49.2 1.0 C B:ILE64 3.6 40.4 1.0 C B:MSE61 3.6 37.3 1.0 HA2 B:GLY65 3.6 49.0 1.0 O B:ILE64 3.6 44.4 1.0 H B:GLY63 3.7 50.4 1.0 N B:GLY65 3.8 40.6 1.0 N B:GLY63 3.8 42.0 1.0 HA B:PRO62 4.0 51.1 1.0 HA B:ILE64 4.0 53.4 1.0 O B:HOH898 4.1 51.4 1.0 H B:GLY65 4.2 48.8 1.0 CA B:GLY65 4.2 40.8 1.0 CA B:ILE64 4.2 44.5 1.0 N B:ILE64 4.2 43.0 1.0 C B:PRO62 4.2 40.6 1.0 CA B:GLY63 4.2 44.2 1.0 N B:MSE61 4.2 41.0 1.0 CA B:PRO62 4.4 42.5 1.0 N B:PRO62 4.4 40.2 1.0 HA3 B:GLY65 4.5 49.0 1.0 O B:HOH882 4.5 51.1 1.0 CA B:MSE61 4.5 33.5 1.0 HB2 B:MSE61 4.7 38.4 1.0 HA B:ASN60 4.8 41.0 1.0 HA2 B:GLY63 4.8 53.1 1.0 O B:PRO62 4.9 37.3 1.0 HA3 B:GLY63 4.9 53.1 1.0 OD1 B:ASN60 4.9 48.3 1.0 H B:ILE64 5.0 51.6 1.0 O B:HOH824 5.0 36.3 1.0

Magnesium binding site 5 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg617 b:63.3 occ:1.00 O B:LYS456 2.4 50.0 1.0 O B:LEU468 2.4 75.5 1.0 O B:ASP470 2.5 64.4 1.0 O B:HOH994 2.8 67.2 1.0 HA B:SER469 3.2 81.7 1.0 HG2 B:LYS471 3.4 81.0 1.0 HA B:ASP457 3.5 51.2 1.0 C B:ASP470 3.5 65.0 1.0 C B:LEU468 3.5 76.2 1.0 C B:SER469 3.5 66.5 1.0 HD3 B:PRO458 3.5 53.7 1.0 C B:LYS456 3.7 43.6 1.0 CA B:SER469 3.7 68.0 1.0 N B:ASP470 3.7 66.4 1.0 HD2 B:PRO458 3.8 53.7 1.0 O B:SER469 3.8 66.3 1.0 H B:ASP470 4.0 79.6 1.0 N B:SER469 4.0 70.0 1.0 CD B:PRO458 4.1 44.7 1.0 HA B:LYS471 4.1 60.3 1.0 CA B:ASP470 4.2 65.9 1.0 CG B:LYS471 4.3 67.5 1.0 CA B:ASP457 4.3 42.7 1.0 N B:LYS471 4.4 48.6 1.0 HD2 B:HIS465 4.4 92.3 1.0 N B:ASP457 4.4 45.4 1.0 HA B:LYS456 4.5 54.0 1.0 HG3 B:LYS471 4.5 81.0 1.0 HB3 B:LYS456 4.6 59.0 1.0 HG B:LEU468 4.6 88.1 1.0 HA B:LEU468 4.6 93.4 1.0 CA B:LYS456 4.7 45.0 1.0 CA B:LYS471 4.7 50.3 1.0 O B:ASN467 4.7 87.8 1.0 CA B:LEU468 4.7 77.8 1.0 HB2 B:ASP470 4.8 79.0 1.0 HB2 B:ASP457 4.8 50.1 1.0 H B:SER469 4.8 84.0 1.0 HE3 B:LYS471 4.9 99.5 1.0 HA B:ASP470 4.9 79.0 1.0 HD12 B:LEU468 5.0 84.7 1.0

Magnesium binding site 6 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:52.2 occ:1.00 O C:ASN60 1.9 84.9 1.0 OD1 C:ASP15 2.0 66.5 1.0 F2 C:BEF602 2.1 51.3 1.0 O C:HOH824 2.1 57.3 1.0 O C:HOH731 2.1 49.9 1.0 OD2 C:ASP58 2.3 62.4 1.0 CG C:ASP15 2.8 69.3 1.0 OD2 C:ASP15 3.0 67.4 1.0 C C:ASN60 3.1 82.2 1.0 CG C:ASP58 3.2 61.8 1.0 BE C:BEF602 3.2 48.6 1.0 HB3 C:ASN60 3.3 93.8 1.0 OD1 C:ASP58 3.5 60.3 1.0 HG3 C:MSE61 3.7 72.2 1.0 HG2 C:MSE61 3.7 72.2 1.0 HA C:MSE61 3.7 95.4 1.0 H C:ASP15 3.8 71.1 1.0 H C:ASN60 3.8 89.6 1.0 CA C:ASN60 3.9 81.1 1.0 CB C:ASN60 4.1 78.1 1.0 N C:MSE61 4.1 86.4 1.0 CG C:MSE61 4.1 60.2 1.0 OD1 C:ASP14 4.1 53.7 1.0 N C:ASN60 4.1 74.7 1.0 F3 C:BEF602 4.1 51.5 1.0 CB C:ASP15 4.2 69.5 1.0 HG3 C:GLU16 4.2 81.7 1.0 HZ2 C:LYS87 4.2 80.7 1.0 HD22 C:ASN60 4.2 82.8 1.0 CA C:MSE61 4.3 79.5 1.0 OE1 C:GLU16 4.3 61.7 1.0 F1 C:BEF602 4.3 50.2 1.0 HZ2 C:LYS108 4.4 65.5 1.0 H C:GLU16 4.4 79.8 1.0 N C:ASP15 4.4 59.2 1.0 HB3 C:ASP15 4.5 83.4 1.0 HB3 C:ASP58 4.5 71.5 1.0 CB C:ASP58 4.5 59.5 1.0 HZ1 C:LYS108 4.6 65.5 1.0 HB2 C:GLU16 4.7 81.5 1.0 ND2 C:ASN60 4.8 68.9 1.0 HE3 C:LYS87 4.8 75.7 1.0 HB2 C:ASN60 4.8 93.8 1.0 CG C:ASP14 4.8 54.8 1.0 CB C:MSE61 4.8 68.9 1.0 HZ1 C:LYS87 4.8 80.7 1.0 HB2 C:ASP15 4.8 83.4 1.0 CG C:ASN60 4.8 70.5 1.0 HA C:ASN60 4.8 97.4 1.0 CA C:ASP15 4.8 64.5 1.0 NZ C:LYS108 4.9 54.6 1.0 H C:MSE61 4.9 103.7 1.0 HZ3 C:LYS108 4.9 65.5 1.0 CD C:GLU16 4.9 66.2 1.0 NZ C:LYS87 4.9 67.2 1.0 HA C:ASP14 4.9 74.4 1.0 CG C:GLU16 4.9 68.1 1.0 HB2 C:ASP58 4.9 71.5 1.0 HD3 C:PRO62 4.9 86.3 1.0 N C:GLU16 4.9 66.5 1.0 H C:GLU59 4.9 60.3 1.0

Magnesium binding site 7 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg611 b:89.5 occ:1.00 O C:HOH927 1.9 62.2 1.0 O C:HOH833 2.5 62.0 1.0 HE C:ARG384 2.5 57.5 1.0 OE2 C:GLU172 2.6 70.4 0.5 OE2 C:GLU172 2.7 70.5 0.5 HG23 C:ILE169 3.0 73.6 1.0 O C:HOH1020 3.1 68.0 1.0 CD C:GLU172 3.2 71.4 0.5 CD C:GLU172 3.3 71.2 0.5 NE C:ARG384 3.3 47.9 1.0 HG12 C:ILE169 3.3 65.7 1.0 HD2 C:ARG384 3.3 59.8 1.0 OE1 C:GLU172 3.4 71.3 0.5 HB3 C:ARG384 3.4 50.0 1.0 OE1 C:GLU172 3.5 71.4 0.5 HB2 C:ARG384 3.6 50.0 1.0 CG2 C:ILE169 3.8 61.3 1.0 HG21 C:ILE169 3.8 73.6 1.0 CD C:ARG384 3.8 49.8 1.0 CB C:ARG384 3.9 41.6 1.0 HH21 C:ARG384 4.0 62.4 1.0 HG3 C:GLU172 4.1 87.7 0.5 CG1 C:ILE169 4.2 54.8 1.0 HA C:ILE169 4.2 69.0 1.0 CG C:GLU172 4.2 73.0 0.5 OG C:SER248 4.2 45.5 1.0 HD13 C:ILE169 4.3 62.7 1.0 HA C:ALA381 4.4 58.0 1.0 CZ C:ARG384 4.4 53.0 1.0 HD2 C:LYS388 4.5 81.3 1.0 CB C:ILE169 4.5 58.4 1.0 CG C:ARG384 4.5 48.3 1.0 HG22 C:ILE169 4.6 73.6 1.0 NH2 C:ARG384 4.6 52.0 1.0 HG2 C:GLU172 4.6 87.7 0.5 CG C:GLU172 4.6 73.0 0.5 HG C:SER248 4.6 54.6 1.0 HD3 C:ARG384 4.7 59.8 1.0 HG3 C:GLU172 4.7 87.7 0.5 CD1 C:ILE169 4.8 52.3 1.0 CA C:ILE169 4.9 57.5 1.0 HB1 C:ALA381 4.9 62.6 1.0 HZ2 C:LYS388 4.9 90.8 1.0 HG13 C:ILE169 4.9 65.7 1.0 O C:ALA381 4.9 41.9 1.0

Magnesium binding site 8 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg612 b:117.6 occ:1.00 O C:GLY63 2.7 88.9 1.0 O C:HOH761 2.7 67.8 1.0 O C:HOH1031 3.1 108.2 1.0 O C:MSE61 3.2 79.2 1.0 O C:HOH978 3.4 73.5 1.0 H C:GLY63 3.7 97.8 1.0 C C:GLY63 3.9 85.2 1.0 N C:GLY63 4.1 81.5 1.0 H C:MSE61 4.2 103.7 1.0 HA2 C:GLY65 4.3 87.6 1.0 HA C:PRO62 4.3 91.5 1.0 C C:MSE61 4.3 79.4 1.0 O C:HOH898 4.4 85.2 1.0 N C:GLY65 4.5 80.9 1.0 C C:ILE64 4.5 84.0 1.0 HA C:ILE64 4.5 99.7 1.0 H C:GLY65 4.6 97.1 1.0 CA C:GLY63 4.6 83.2 1.0 CA C:GLY65 4.7 73.0 1.0 HA3 C:GLY65 4.8 87.6 1.0 C C:PRO62 4.8 78.3 1.0 OD1 C:ASN60 4.8 68.0 1.0 O C:ILE64 4.8 85.3 1.0 CA C:PRO62 4.8 76.2 1.0 N C:ILE64 4.9 80.2 1.0 CA C:ILE64 4.9 83.0 1.0 N C:MSE61 5.0 86.4 1.0

Magnesium binding site 9 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:44.9 occ:1.00 F3 D:BEF602 1.9 33.3 1.0 OD2 D:ASP58 2.0 50.3 1.0 O D:ASN60 2.0 49.4 1.0 O D:HOH765 2.0 38.2 1.0 O D:HOH808 2.1 43.8 1.0 OD1 D:ASP15 2.1 44.9 1.0 CG D:ASP58 3.0 50.5 1.0 BE D:BEF602 3.1 38.3 1.0 CG D:ASP15 3.1 44.6 1.0 C D:ASN60 3.3 49.1 1.0 OD1 D:ASP58 3.4 42.0 1.0 OD2 D:ASP15 3.4 42.2 1.0 HG2 D:MSE61 3.5 56.9 1.0 HB3 D:ASN60 3.5 54.1 1.0 H D:ASP15 3.8 43.2 1.0 HA D:MSE61 3.8 63.2 1.0 H D:ASN60 3.8 50.9 1.0 HE3 D:LYS87 3.9 79.2 1.0 OD1 D:ASP14 4.0 40.8 1.0 F1 D:BEF602 4.0 37.1 1.0 HG3 D:MSE61 4.0 56.9 1.0 CA D:ASN60 4.1 47.6 1.0 OE1 D:GLU16 4.1 51.4 1.0 F2 D:BEF602 4.2 41.0 1.0 CG D:MSE61 4.2 47.4 1.0 CB D:ASN60 4.2 45.1 1.0 N D:ASN60 4.2 42.5 1.0 N D:MSE61 4.2 55.4 1.0 HD22 D:ASN60 4.3 62.7 1.0 HZ2 D:LYS108 4.3 45.2 1.0 HG3 D:GLU16 4.3 62.3 1.0 CB D:ASP58 4.3 47.3 1.0 HB3 D:ASP58 4.4 56.7 1.0 CB D:ASP15 4.4 37.5 1.0 HZ1 D:LYS87 4.4 88.7 1.0 HZ1 D:LYS108 4.4 45.2 1.0 H D:GLU16 4.4 50.1 1.0 N D:ASP15 4.4 36.0 1.0 CA D:MSE61 4.4 52.7 1.0 HZ2 D:LYS87 4.5 88.7 1.0 CG D:ASP14 4.6 42.8 1.0 HB3 D:ASP15 4.6 45.0 1.0 HB2 D:ASP58 4.6 56.7 1.0 ND2 D:ASN60 4.7 52.3 1.0 NZ D:LYS108 4.7 37.6 1.0 HZ3 D:LYS108 4.7 45.2 1.0 NZ D:LYS87 4.7 73.9 1.0 CG D:ASN60 4.8 47.8 1.0 CE D:LYS87 4.8 66.0 1.0 HA D:ASP14 4.8 48.8 1.0 HB2 D:GLU16 4.8 62.7 1.0 OD2 D:ASP14 4.8 41.7 1.0 CD D:GLU16 4.8 53.9 1.0 CB D:MSE61 4.9 50.1 1.0 CA D:ASP15 5.0 39.1 1.0 CG D:GLU16 5.0 51.9 1.0 N D:GLU16 5.0 41.8 1.0 HA D:ASN60 5.0 57.1 1.0

Magnesium binding site 10 out of 11 in the 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 1.9 Angstrom Crystal Structure of Dimeric Porx, Co-Crystallized in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg611 b:64.6 occ:1.00 O D:HOH1001 2.2 52.4 1.0 O D:HOH988 2.3 75.6 1.0 O D:MSE61 2.4 51.2 1.0 O D:HOH976 2.6 59.3 1.0 O D:GLY63 2.6 50.3 1.0 HA2 D:GLY65 3.5 55.9 1.0 H D:MSE61 3.5 66.5 1.0 C D:MSE61 3.5 53.7 1.0 C D:GLY63 3.6 50.5 1.0 C D:ILE64 3.6 44.6 1.0 O D:HOH1008 3.7 80.1 1.0 O D:ILE64 3.7 44.4 1.0 N D:GLY65 3.7 49.5 1.0 H D:GLY63 3.8 64.0 1.0 N D:GLY63 4.0 53.3 1.0 HA D:PRO62 4.0 62.6 1.0 CA D:GLY65 4.0 46.6 1.0 H D:GLY65 4.1 59.5 1.0 HA D:ILE64 4.1 57.9 1.0 O D:HOH893 4.2 57.4 1.0 N D:MSE61 4.2 55.4 1.0 CA D:ILE64 4.3 48.2 1.0 C D:PRO62 4.3 50.7 1.0 HA3 D:GLY65 4.3 55.9 1.0 N D:ILE64 4.3 48.6 1.0 CA D:PRO62 4.4 52.1 1.0 N D:PRO62 4.4 49.4 1.0 CA D:GLY63 4.4 55.1 1.0 CA D:MSE61 4.5 52.7 1.0 O D:HOH923 4.6 78.9 1.0 O D:HOH1065 4.6 97.0 1.0 HB2 D:MSE61 4.7 60.1 1.0 O D:HOH973 4.8 58.2 1.0 HA D:ASN60 4.8 57.1 1.0 OD1 D:ASN60 4.9 55.5 1.0 O D:HOH725 5.0 43.0 1.0 O D:HOH708 5.0 60.1 1.0

C.Schmitz, M.Madej, Z.Nowakowska, A.Cuppari, A.Jacula, M.Ksiazek, K.Mikruta, J.Wisniewski, N.Pudelko-Malik, A.Saran, N.Zeytuni, P.Mlynarz, R.J.Lamont, I.Uson, V.Siksnys, J.Potempa, M.Sola. Response Regulator Porx Coordinates Oligonucleotide Signalling and Gene Expression to Control the Secretion of Virulence Factors. Nucleic Acids Res. V. 50 12558 2022.
ISSN: ESSN 1362-4962
PubMed: 36464236
DOI: 10.1093/NAR/GKAC1103